Gene detail

Detail information of GWHGAAZE003555

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011084423.1	7.5127E-155	PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Sesamum indicum]
Swissprot	tr\|Q652P4\|CPSF2_ORYSJ	1E-134	Cleavage and polyadenylation specificity factor subunit 2
trEMBL	tr\|E0CV08\|E0CV08_VITVI	3E-153	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22708.3}
TAIR10	AT5G23880.1	1E-108	cleavage and polyadenylation specificity factor 100

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100032664	100037154	+
GWHAAZE00000001	mRNA	100032664	100037154	+
GWHAAZE00000001	exon	100032664	100032726	+
GWHAAZE00000001	exon	100032818	100032945	+
GWHAAZE00000001	exon	100033041	100033156	+
GWHAAZE00000001	exon	100033276	100033442	+
GWHAAZE00000001	exon	100033511	100033662	+
GWHAAZE00000001	exon	100033849	100033906	+
GWHAAZE00000001	exon	100033994	100034101	+
GWHAAZE00000001	exon	100034402	100034654	+
GWHAAZE00000001	exon	100035020	100035057	+
GWHAAZE00000001	exon	100035610	100035694	+
GWHAAZE00000001	exon	100035777	100035906	+
GWHAAZE00000001	exon	100036000	100036044	+
GWHAAZE00000001	exon	100036420	100036584	+
GWHAAZE00000001	exon	100036712	100036786	+
GWHAAZE00000001	exon	100037055	100037154	+
GWHAAZE00000001	CDS	100032664	100032726	+
GWHAAZE00000001	CDS	100032818	100032945	+
GWHAAZE00000001	CDS	100033041	100033156	+
GWHAAZE00000001	CDS	100033276	100033442	+
GWHAAZE00000001	CDS	100033511	100033662	+
GWHAAZE00000001	CDS	100033849	100033906	+
GWHAAZE00000001	CDS	100033994	100034101	+
GWHAAZE00000001	CDS	100034402	100034654	+
GWHAAZE00000001	CDS	100035020	100035057	+
GWHAAZE00000001	CDS	100035610	100035694	+
GWHAAZE00000001	CDS	100035777	100035799	+
GWHAAZE00000001	three_prime_UTR	100035800	100035906	+
GWHAAZE00000001	three_prime_UTR	100036000	100036044	+
GWHAAZE00000001	three_prime_UTR	100036420	100036584	+
GWHAAZE00000001	three_prime_UTR	100036712	100036786	+
GWHAAZE00000001	three_prime_UTR	100037055	100037154	+

Transcript Sequence
>GWHTAAZE003561 ATGGGTGGGTCAACAAGATTTGGATGCCTTCATCACAGTGATACTAAAAAAATTATGTTTTTGGCAAAAGGAGAAGGAATTGTTATTGCTCCTCATGTAGCTGGTCATCTATTAGGTGGTACAGTTTGGAAGATAACAAAAGATGGGGAAGATGTTATATATGCTGTTGACTTCAACCATCGGAAAGAAAGGCATTTGAACGGAACTGTTTTGGAATCTTTTGTCCAGCCCGCTTTCCTAATAACAGATGCCTATAATGCTTTGAATAATCAGCCTTCTAGACGTCAATGGGATCAAGAATTTCTTGATGCTATATTGAAGACTCATAAAAGCGGATACAAATGTCTTTCCTTTTGTTTTTATTTTGATGCCATACTAAGGACTCTTAAGAGCGGATGGAAACGTATTGCTACCAGTGGACATTGCTGGTCTTATATTGGAGCTGATTTTAATACTGGAACAGGTGGATTTTCTTATTGGGCACAGCATCATTTAACCCACCCTATGTACTTTCTCACGTATGTTTCATCAAGCACAATCGATTATGTCAAGAGTTTCCTTGAGTGGATGAGCTATTCAATAGCAAAGTCTTTTAAGCACACTCATGACAATGCTTTTCTTTTGAAGCATATCACTCTTTTGATCAGTAAGAGTGAGCTAGAAAATGTTCCTGAAGGCACCAAGATCGTTCTAGCTTCTATGGCCAGTTTAGAAGCTGGGTTCTCACAAGATATATTCGTTGAGTGGGCTTCTGATGTAAAAAATCGCGTTCTTTTTACGGAAAGGGGCCAGTTTGCAACGCTTGCCCGAATGCTTCAGTCAGATCCACCTCCTAAAGCTGTTAAAGTTACCATGTCAAAGAGAGTTCCTTTAGTTGGGGATGAATTAGCCGCTTATGAAGAAGCGCAAAACCGTAAAAAACAGCAGGAAGCTCTGAAAGCTACTCTTATCAAAGAGGAAGAATCAAAAGCAGTTCTTGGAGCTGAGCTTCCTGCGGGTGATCCAATGGTCATTGATTGTACCATTAGCCGTGCTTCGTCAGATGCTGTTTGCCACATGGCCACATTTAGAGGACATTATGGGGTCCAACTCAAGTCTTCGTTGAGTTTCATGGATTTTGAGGGGCGTTCAATTAAATCGATTCTTGCACGTCGCTCCCTTAAAGCTGGTCTTGGTGCATGGATCGGCTGAGGCCACTGAGCATTTGAAGCAGCACTGTTTGAAACATGTTTGCGCCCATGTATGCTCCCAAAATTGAAGAAACGATCGATGTTACTTTGGATTTGTGTGCTTATAAGGTGCAACTTTCGGATAAGCTAATGAGTATTGTGCTCTTTAAGAAGCTTGGAGATTATGAAATAGCGTGGGTTGATTCTGAAGTAGGGAAGACAGAGTGGCATGTTGTCTTTACTTCCTCTTTGGACTCCAGCTCCACCACATAAATCTGTACTTGTGGGAGATATTAAATGGCAGACTTCAAGCAGTTCCTTGCAGGCAAGGGTATACAGGTAGAATTTTCGGGTGGGGCCTTGCGATGTGGGGAGTACGTAACGCTACGGAAAGTTGGAGATGCAAGTCAGAAGGGTGGTGCTGCTGCCATTCAGCAAATTGTTATTGAAGGTCCATTGTCTGAGGAATATTACATGATTCGTGAATATCTCTATTCGCAGTTCTATTCACTGT

Network for GWHGAAZE003555

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16661.6	Lactamase_B_6	19	71	2.50E-18
PF10996.9	Beta-Casp	159	272	4.00E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14402	CPSF2, CFT2	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.418
	SRR3591706	second leaf	6.273
	SRR3591707	mature leaf	5.625
	SRR3591708	Shoot apex	10.616
	SRR3591709	Stem	8.773
	SRR3591710	White floral bud	12.544
	SRR3591711	White flower	11.113
	SRR3591712	Green floral bud	7.396
	SRR3591713	Yellow flower	12.849
SRP173429	SRR8316895	Juvenile bud stage	1.957
	SRR8316896	Juvenile bud stage	1.220
	SRR8316897	Juvenile bud stage	0.673
	SRR8316894	Third green stage	0.687
	SRR8316900	Third green stage	0.983
	SRR8316901	Third green stage	0.948
	SRR8316898	Complete white stage	0.303
	SRR8316899	Complete white stage	1.285
	SRR8316903	Complete white stage	0.330
	SRR8316902	Silver flowering stage	0.442
	SRR8316904	Silver flowering stage	0.409
	SRR8316905	Silver flowering stage	0.385
	SRR8316906	Gold flowering stage	1.012
	SRR8316907	Gold flowering stage	0.874
	SRR8316908	Gold flowering stage	0.536
SRP132670	SRR6706286	Control	0.657
	SRR6706287	Light intensity 50%	0.905
	SRR6706288	Light intensity 20%	0.615
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.547
	CNS0095593	Slightly white alabastrum(diploid) 2	1.095
	CNS0095594	Slightly white alabastrum(diploid) 3	1.927
	CNS0095595	Whole white alabastrum(diploid) 2	1.560
	CNS0095596	Whole white alabastrum(diploid) 3	1.212
	CNS0095597	Whole white alabastrum(diploid) 4	1.640
	CNS0095598	Silvery flower (diploied) 1	1.687
	CNS0095599	Silvery flower (diploied) 2	1.457
	CNS0095600	Silvery flower (diploied) 3	1.221
	CNS0095601	Golden flower (diploid) 1	1.086
	CNS0095602	Golden flower (diploid) 2	0.676
	CNS0095603	Golden flower (diploid) 3	0.649
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.296
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.607
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.625
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.814
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.997
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.091
	CNS0095610	Silvery flower (tetraploid) 1	0.910
	CNS0095611	Silvery flower (tetraploid) 2	0.722
	CNS0095612	Silvery flower (tetraploid) 3	0.759
	CNS0095613	Golden flower (tetraploid) 1	0.882
	CNS0095614	Golden flower (tetraploid) 2	0.841
	CNS0095615	Golden flower (tetraploid) 3	0.435
CRA001975	CRR073297	Stem 1	1.183
	CRR073298	Stem 2	1.346
	CRR073299	Stem 3	0.705
	CRR073300	Leaf 1	1.084
	CRR073301	Leaf 2	0.986
	CRR073302	Leaf 3	0.510
	CRR073303	Juvenile bud 1	0.137
	CRR073304	Juvenile bud 2	0.528
	CRR073305	Juvenile bud 3	0.231
	CRR073306	Third green 1	0.110
	CRR073307	Third green 2	0.205
	CRR073308	Third green 3	0.222
	CRR073309	Second white 1	0.217
	CRR073310	Second white 2	0.196
	CRR073311	Second white 3	0.177
	CRR073312	Silver flowering 1	0.288
	CRR073313	Silver flowering 2	0.077
	CRR073314	Silver flowering 3	0.389
	CRR073315	Gold flowering 1	0.918
	CRR073316	Gold flowering 2	0.924
	CRR073317	Gold flowering 3	0.058
	CRR073318	Tawny withering 1	0.541
	CRR073319	Tawny withering 2	0.754
	CRR073320	Tawny withering 3	1.412