Detail information of GWHGAAZE003547


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009601805.10PREDICTED: 4-coumarate--CoA ligase-like 10 [Nicotiana tomentosiformis]
COGYP_002360450.11E-138AMP-dependent synthetase and ligase
Swissprottr|Q9SMT7|4CLLA_ARATH0Oxalate--CoA ligase {ECO:0000305}
trEMBLtr|K4BF45|K4BF45_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g025720.2.1}
TAIR10AT3G48990.10AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9979777799800912-
GWHAAZE00000001mRNA9979777799800912-
GWHAAZE00000001exon9980071299800912-
GWHAAZE00000001exon9979952499800571-
GWHAAZE00000001exon9979858299798685-
GWHAAZE00000001exon9979777799798177-
GWHAAZE00000001CDS9980071299800912-
GWHAAZE00000001CDS9979952499800571-
GWHAAZE00000001CDS9979858299798685-
GWHAAZE00000001CDS9979795999798177-
GWHAAZE00000001three_prime_UTR9979777799797958-
Transcript Sequence

Network for GWHGAAZE003547

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding144155.50E-97
PF13193.7AMP-binding_C4244993.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K22133AAE3 Metabolic pathways map01100
Glyoxylate and dicarboxylate metabolismmap00630

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf281.542
SRR3591706second leaf40.594
SRR3591707mature leaf68.547
SRR3591708Shoot apex31.134
SRR3591709Stem284.732
SRR3591710White floral bud182.019
SRR3591711White flower263.037
SRR3591712Green floral bud55.961
SRR3591713Yellow flower310.836
SRP173429 SRR8316895Juvenile bud stage 123.090
SRR8316896Juvenile bud stage 121.645
SRR8316897Juvenile bud stage 73.409
SRR8316894Third green stage 33.499
SRR8316900Third green stage 66.044
SRR8316901Third green stage 97.200
SRR8316898Complete white stage 57.850
SRR8316899Complete white stage 171.095
SRR8316903Complete white stage 103.691
SRR8316902Silver flowering stage274.579
SRR8316904Silver flowering stage227.947
SRR8316905Silver flowering stage89.836
SRR8316906Gold flowering stage 300.613
SRR8316907Gold flowering stage 435.168
SRR8316908Gold flowering stage 382.147
SRP132670SRR6706286Control88.776
SRR6706287Light intensity 50%98.299
SRR6706288Light intensity 20%74.882
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1145.125
CNS0095593Slightly white alabastrum(diploid) 2182.176
CNS0095594Slightly white alabastrum(diploid) 3180.286
CNS0095595Whole white alabastrum(diploid) 2148.554
CNS0095596Whole white alabastrum(diploid) 343.409
CNS0095597Whole white alabastrum(diploid) 499.787
CNS0095598Silvery flower (diploied) 1323.593
CNS0095599Silvery flower (diploied) 2232.669
CNS0095600Silvery flower (diploied) 3256.802
CNS0095601Golden flower (diploid) 1293.886
CNS0095602Golden flower (diploid) 2293.180
CNS0095603Golden flower (diploid) 3290.144
CNS0095604Slightly white alabastrum(tetraploid) 133.160
CNS0095605Slightly white alabastrum(tetraploid) 233.538
CNS0095606Slightly white alabastrum(tetraploid) 337.979
CNS0095607Whole white alabastrum(tetraploid) 124.561
CNS0095608Whole white alabastrum(tetraploid) 227.528
CNS0095609Whole white alabastrum(tetraploid) 342.537
CNS0095610Silvery flower (tetraploid) 1178.861
CNS0095611Silvery flower (tetraploid) 296.721
CNS0095612Silvery flower (tetraploid) 3180.207
CNS0095613Golden flower (tetraploid) 1302.964
CNS0095614Golden flower (tetraploid) 2235.310
CNS0095615Golden flower (tetraploid) 361.756
CRA001975CRR073297Stem 174.193
CRR073298Stem 256.825
CRR073299Stem 370.946
CRR073300Leaf 190.847
CRR073301Leaf 2129.219
CRR073302Leaf 369.726
CRR073303Juvenile bud 193.115
CRR073304Juvenile bud 2106.153
CRR073305Juvenile bud 3183.058
CRR073306Third green 1953.133
CRR073307Third green 2719.330
CRR073308Third green 3820.053
CRR073309Second white 1384.037
CRR073310Second white 2346.161
CRR073311Second white 3342.205
CRR073312Silver flowering 1631.374
CRR073313Silver flowering 2531.919
CRR073314Silver flowering 3538.553
CRR073315Gold flowering 1105.322
CRR073316Gold flowering 2169.646
CRR073317Gold flowering 3200.725
CRR073318Tawny withering 1249.226
CRR073319Tawny withering 2625.853
CRR073320Tawny withering 3394.224