Detail information of GWHGAAZE003540


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010107437.11.42684E-5525.3 kDa vesicle transport protein [Morus notabilis]
Swissprottr|Q94AU2|SEC22_ARATH1E-2525.3 kDa vesicle transport protein
trEMBLtr|W9SL88|W9SL88_9ROSA5E-5625.3 kDa vesicle transport protein {ECO:0000313|EMBL:EXC15975.1}
TAIR10AT5G52270.18E-32SNARE-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9967157599672424-
GWHAAZE00000001mRNA9967157599672424-
GWHAAZE00000001exon9967157599671780-
GWHAAZE00000001exon9967188899672048-
GWHAAZE00000001exon9967236399672424-
GWHAAZE00000001CDS9967236399672424-
GWHAAZE00000001CDS9967188899672048-
GWHAAZE00000001CDS9967157599671780-
Transcript Sequence

Network for GWHGAAZE003540

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13774.7Longin24751.30E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08517SEC22 SNARE interactions in vesicular transport map04130
Phagosomemap04145

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.880
SRR3591706second leaf0.542
SRR3591707mature leaf0.194
SRR3591708Shoot apex1.242
SRR3591709Stem1.338
SRR3591710White floral bud1.118
SRR3591711White flower1.774
SRR3591712Green floral bud0.712
SRR3591713Yellow flower0.685
SRP173429 SRR8316895Juvenile bud stage 0.110
SRR8316896Juvenile bud stage 0.286
SRR8316897Juvenile bud stage 0.506
SRR8316894Third green stage 0.062
SRR8316900Third green stage 0.283
SRR8316901Third green stage 0.640
SRR8316898Complete white stage 0.202
SRR8316899Complete white stage 0.256
SRR8316903Complete white stage 0.087
SRR8316902Silver flowering stage0.171
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.008
SRR8316906Gold flowering stage 0.343
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.674
SRP132670SRR6706286Control0.254
SRR6706287Light intensity 50%0.115
SRR6706288Light intensity 20%0.156
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.845
CNS0095593Slightly white alabastrum(diploid) 22.193
CNS0095594Slightly white alabastrum(diploid) 30.459
CNS0095595Whole white alabastrum(diploid) 20.602
CNS0095596Whole white alabastrum(diploid) 30.070
CNS0095597Whole white alabastrum(diploid) 40.303
CNS0095598Silvery flower (diploied) 10.685
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.019
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 11.467
CNS0095605Slightly white alabastrum(tetraploid) 20.836
CNS0095606Slightly white alabastrum(tetraploid) 30.861
CNS0095607Whole white alabastrum(tetraploid) 10.213
CNS0095608Whole white alabastrum(tetraploid) 20.104
CNS0095609Whole white alabastrum(tetraploid) 30.527
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.600
CNS0095612Silvery flower (tetraploid) 30.179
CNS0095613Golden flower (tetraploid) 10.631
CNS0095614Golden flower (tetraploid) 20.122
CNS0095615Golden flower (tetraploid) 30.826
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.107
CRR073301Leaf 20.000
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.516
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.110
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.207
CRR073319Tawny withering 20.231
CRR073320Tawny withering 30.000