Gene detail

Detail information of GWHGAAZE003509

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05246.1	2.1748E-164	unnamed protein product [Coffea canephora]
COG	YP_007081684.1	0.00000005	RRM domain-containing RNA-binding protein
Swissprot	tr\|P92965\|RS40_ARATH	6E-108	Serine/arginine-rich splicing factor RS40
trEMBL	tr\|A0A068U9V3\|A0A068U9V3_COFCA	8E-165	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05246.1}
TAIR10	AT4G25500.4	3E-80	arginine/serine-rich splicing factor 35

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	99256033	99260210	+
GWHAAZE00000001	mRNA	99256033	99260210	+
GWHAAZE00000001	exon	99256033	99256156	+
GWHAAZE00000001	exon	99257275	99257385	+
GWHAAZE00000001	exon	99258818	99258930	+
GWHAAZE00000001	exon	99259015	99259247	+
GWHAAZE00000001	exon	99259400	99259966	+
GWHAAZE00000001	exon	99260150	99260210	+
GWHAAZE00000001	five_prime_UTR	99256033	99256156	+
GWHAAZE00000001	five_prime_UTR	99257275	99257279	+
GWHAAZE00000001	CDS	99257280	99257385	+
GWHAAZE00000001	CDS	99258818	99258930	+
GWHAAZE00000001	CDS	99259015	99259247	+
GWHAAZE00000001	CDS	99259400	99259966	+
GWHAAZE00000001	CDS	99260150	99260210	+

Transcript Sequence
>GWHTAAZE003515 AAACATATTATATTACCTCACGTGCTTGGGATATGAGGAGGTCAGTCCTTTAAAGTGATTCTCTGCCGCAACGAGCTTCTTCCAACTATCCTCGCGATTAGGGTTTTCGTCTGAAGGTCGAGAGGTGAAATGAGGCCCATTTTCTGTGGAAATTTTGAGTTTGATGCACGGCAGTCGGATCTTGAGAGGCTTTTTAGAAGATATGGGAAGGTTGACAGGGTGGATATGAAGTCCGGATTTGCTTTTGTTTATATGGAGGACGAGAGAGATGCAGAGGATGCAATTCGACGTCTTGATCGTATAGAATTTGGTAGGAAGGGACGCCGACTTCGTGTTGAGTGGACGAAGCAAGAACGTAGTGTTAGGAAGCCTGAGAGTTCAAGAAGATCTTTTAATTCAAGACCCTCAAAGACTTTGTTTGTTATTAATTTTGATCCATATAATACAAGGACTAGGGATTTGGAGAGGCATTTCGATCCATACGGGAAAATATTGAACGTCAGGATCAGAAAGAATTTTGCATTTATCCAGTTTGAATCACAGGAGGATGCCACCAAAGCTCTGGATGCTACAAACATGAGCAAGCTGATGGATCGAGTTATTTCAGTGGAATATGCCATAAAAGATGACGATGAGAGGAGAAACGGATATAGCCCTGATAGAAGCCGTGATAGGTCCCCTCGGAGGGATAGGGGGCGATCCCCTAGCCCCTATGGGAGACAAAGGGGGAGTCCTGATTACGGACGTGGACGTGGCCGTAGCCCTAGCCCCTATCGAAGAGAGCGGGCCAGTCCTGATTATGGTCGGGGTCCGAGCCCTGTTGGACGGGAGAGGAATTCTGAGTATAGCCGTGGTGGTCATGGCCCTAGCCCTAGTCACAATGGGAGGGATAGGAATTCCAATTATGGCCGTGGTAATAGCTTGAGCCCTCAAAGAGAGAGGCCTAGCCCTGAACATGGCCGTGGATCCAGCCCAAGAGAGAGGCTTAGTCCGAATGACTATCATCGACGCCCTAGCCCAGGTCCTCGAAGAGAGAGGGTTAGTCCTGAAGATTATCGAGGTGGAAGTAGCCCAAATTCTAAGCCCGAACCAAGGGACAGCCCTGCATATGATGGAGCTGAAAGCCCCATGCCGAATCAACTTAGGAGTCAGTCACCCCTGGCACGAGAGAGATCTCCATCACTATCGCGATCACAGTCTCCAGCTTGA

Network for GWHGAAZE003509

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	4	62	1.20E-13
PF00076.23	RRM_1	96	158	7.40E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12893	SFRS4_5_6	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	65.039
	SRR3591706	second leaf	46.583
	SRR3591707	mature leaf	30.811
	SRR3591708	Shoot apex	79.528
	SRR3591709	Stem	55.504
	SRR3591710	White floral bud	59.028
	SRR3591711	White flower	62.651
	SRR3591712	Green floral bud	70.256
	SRR3591713	Yellow flower	66.616
SRP173429	SRR8316895	Juvenile bud stage	45.233
	SRR8316896	Juvenile bud stage	53.250
	SRR8316897	Juvenile bud stage	35.476
	SRR8316894	Third green stage	19.529
	SRR8316900	Third green stage	48.185
	SRR8316901	Third green stage	59.647
	SRR8316898	Complete white stage	21.547
	SRR8316899	Complete white stage	81.297
	SRR8316903	Complete white stage	36.431
	SRR8316902	Silver flowering stage	17.623
	SRR8316904	Silver flowering stage	18.465
	SRR8316905	Silver flowering stage	10.668
	SRR8316906	Gold flowering stage	30.849
	SRR8316907	Gold flowering stage	34.626
	SRR8316908	Gold flowering stage	33.147
SRP132670	SRR6706286	Control	64.005
	SRR6706287	Light intensity 50%	65.360
	SRR6706288	Light intensity 20%	70.910
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.053
	CNS0095593	Slightly white alabastrum(diploid) 2	70.805
	CNS0095594	Slightly white alabastrum(diploid) 3	60.431
	CNS0095595	Whole white alabastrum(diploid) 2	50.015
	CNS0095596	Whole white alabastrum(diploid) 3	44.641
	CNS0095597	Whole white alabastrum(diploid) 4	39.591
	CNS0095598	Silvery flower (diploied) 1	58.455
	CNS0095599	Silvery flower (diploied) 2	46.550
	CNS0095600	Silvery flower (diploied) 3	54.472
	CNS0095601	Golden flower (diploid) 1	52.199
	CNS0095602	Golden flower (diploid) 2	56.108
	CNS0095603	Golden flower (diploid) 3	56.574
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.274
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.355
	CNS0095606	Slightly white alabastrum(tetraploid) 3	106.653
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.597
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.663
	CNS0095609	Whole white alabastrum(tetraploid) 3	63.092
	CNS0095610	Silvery flower (tetraploid) 1	66.212
	CNS0095611	Silvery flower (tetraploid) 2	62.695
	CNS0095612	Silvery flower (tetraploid) 3	51.545
	CNS0095613	Golden flower (tetraploid) 1	53.077
	CNS0095614	Golden flower (tetraploid) 2	70.753
	CNS0095615	Golden flower (tetraploid) 3	49.761
CRA001975	CRR073297	Stem 1	54.781
	CRR073298	Stem 2	55.768
	CRR073299	Stem 3	46.992
	CRR073300	Leaf 1	51.112
	CRR073301	Leaf 2	56.843
	CRR073302	Leaf 3	34.097
	CRR073303	Juvenile bud 1	37.655
	CRR073304	Juvenile bud 2	36.110
	CRR073305	Juvenile bud 3	49.612
	CRR073306	Third green 1	16.310
	CRR073307	Third green 2	13.218
	CRR073308	Third green 3	13.633
	CRR073309	Second white 1	11.809
	CRR073310	Second white 2	11.170
	CRR073311	Second white 3	12.698
	CRR073312	Silver flowering 1	15.402
	CRR073313	Silver flowering 2	13.352
	CRR073314	Silver flowering 3	13.998
	CRR073315	Gold flowering 1	20.457
	CRR073316	Gold flowering 2	31.929
	CRR073317	Gold flowering 3	19.877
	CRR073318	Tawny withering 1	53.511
	CRR073319	Tawny withering 2	52.789
	CRR073320	Tawny withering 3	54.024