Detail information of GWHGAAZE003499


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002280266.20PREDICTED: ABC transporter B family member 28 [Vitis vinifera]
COGYP_005367043.11E-96efflux ABC transporter permease/ATP-binding protein
Swissprottr|Q8LPQ6|AB28B_ARATH0ABC transporter B family member 28
trEMBLtr|A5BYH8|A5BYH8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN61922.1}
TAIR10AT4G25450.10non-intrinsic ABC protein 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9904930199054580-
GWHAAZE00000001mRNA9904930199054580-
GWHAAZE00000001exon9905417899054580-
GWHAAZE00000001exon9905347599053662-
GWHAAZE00000001exon9905294499052967-
GWHAAZE00000001exon9905256099052686-
GWHAAZE00000001exon9905191099052010-
GWHAAZE00000001exon9905168999051739-
GWHAAZE00000001exon9905145899051586-
GWHAAZE00000001exon9905109499051156-
GWHAAZE00000001exon9905073699051015-
GWHAAZE00000001exon9905037199050519-
GWHAAZE00000001exon9905017899050267-
GWHAAZE00000001exon9904995099050084-
GWHAAZE00000001exon9904979399049849-
GWHAAZE00000001exon9904964599049701-
GWHAAZE00000001exon9904930199049537-
GWHAAZE00000001CDS9905417899054580-
GWHAAZE00000001CDS9905347599053662-
GWHAAZE00000001CDS9905294499052967-
GWHAAZE00000001CDS9905256099052686-
GWHAAZE00000001CDS9905191099052010-
GWHAAZE00000001CDS9905168999051739-
GWHAAZE00000001CDS9905145899051586-
GWHAAZE00000001CDS9905109499051156-
GWHAAZE00000001CDS9905073699051015-
GWHAAZE00000001CDS9905037199050519-
GWHAAZE00000001CDS9905017899050267-
GWHAAZE00000001CDS9904995099050084-
GWHAAZE00000001CDS9904979399049849-
GWHAAZE00000001CDS9904964599049701-
GWHAAZE00000001CDS9904930199049537-
Transcript Sequence

Network for GWHGAAZE003499

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.24ABC_membrane1152295.40E-13
PF00664.24ABC_membrane2473621.50E-14
PF00005.28ABC_tran4706211.50E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05657ABCB10 ABC transporters map02010

Gene Ontology

GO term OntologyName
GO:0055085biological_processtransmembrane transport
GO:0016021cellular_componentintegral component of membrane
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0042626molecular_functionATPase-coupled transmembrane transporter activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.652
SRR3591706second leaf63.631
SRR3591707mature leaf68.707
SRR3591708Shoot apex39.469
SRR3591709Stem16.857
SRR3591710White floral bud17.079
SRR3591711White flower15.102
SRR3591712Green floral bud17.102
SRR3591713Yellow flower11.098
SRP173429 SRR8316895Juvenile bud stage 13.424
SRR8316896Juvenile bud stage 16.389
SRR8316897Juvenile bud stage 12.150
SRR8316894Third green stage 6.402
SRR8316900Third green stage 22.650
SRR8316901Third green stage 20.593
SRR8316898Complete white stage 9.120
SRR8316899Complete white stage 24.539
SRR8316903Complete white stage 13.933
SRR8316902Silver flowering stage8.540
SRR8316904Silver flowering stage12.682
SRR8316905Silver flowering stage5.857
SRR8316906Gold flowering stage 14.273
SRR8316907Gold flowering stage 13.926
SRR8316908Gold flowering stage 16.202
SRP132670SRR6706286Control22.612
SRR6706287Light intensity 50%23.400
SRR6706288Light intensity 20%26.918
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.498
CNS0095593Slightly white alabastrum(diploid) 29.962
CNS0095594Slightly white alabastrum(diploid) 310.167
CNS0095595Whole white alabastrum(diploid) 29.678
CNS0095596Whole white alabastrum(diploid) 313.175
CNS0095597Whole white alabastrum(diploid) 411.323
CNS0095598Silvery flower (diploied) 117.741
CNS0095599Silvery flower (diploied) 215.969
CNS0095600Silvery flower (diploied) 315.902
CNS0095601Golden flower (diploid) 113.526
CNS0095602Golden flower (diploid) 214.211
CNS0095603Golden flower (diploid) 313.508
CNS0095604Slightly white alabastrum(tetraploid) 119.678
CNS0095605Slightly white alabastrum(tetraploid) 215.432
CNS0095606Slightly white alabastrum(tetraploid) 332.236
CNS0095607Whole white alabastrum(tetraploid) 110.638
CNS0095608Whole white alabastrum(tetraploid) 210.209
CNS0095609Whole white alabastrum(tetraploid) 331.895
CNS0095610Silvery flower (tetraploid) 121.830
CNS0095611Silvery flower (tetraploid) 227.073
CNS0095612Silvery flower (tetraploid) 328.040
CNS0095613Golden flower (tetraploid) 18.195
CNS0095614Golden flower (tetraploid) 218.516
CNS0095615Golden flower (tetraploid) 39.656
CRA001975CRR073297Stem 119.182
CRR073298Stem 218.440
CRR073299Stem 315.762
CRR073300Leaf 121.085
CRR073301Leaf 218.384
CRR073302Leaf 315.323
CRR073303Juvenile bud 116.706
CRR073304Juvenile bud 214.947
CRR073305Juvenile bud 317.132
CRR073306Third green 110.350
CRR073307Third green 25.660
CRR073308Third green 38.679
CRR073309Second white 19.034
CRR073310Second white 27.773
CRR073311Second white 35.547
CRR073312Silver flowering 15.709
CRR073313Silver flowering 25.229
CRR073314Silver flowering 34.984
CRR073315Gold flowering 146.040
CRR073316Gold flowering 272.187
CRR073317Gold flowering 337.695
CRR073318Tawny withering 111.514
CRR073319Tawny withering 211.741
CRR073320Tawny withering 39.994