Gene detail

Detail information of GWHGAAZE003494

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280303.1	0	PREDICTED: calcium-dependent protein kinase 26-like isoform X1 [Vitis vinifera]
COG	YP_007120134.1	4E-28	protein kinase family protein
Swissprot	tr\|Q3E9C0\|CDPKY_ARATH	3E-95	Calcium-dependent protein kinase 34
trEMBL	tr\|S5RNI6\|S5RNI6_9ROSI	0	Calcium-dependent protein kinase 25 {ECO:0000313\|EMBL:AGS15002.1}
TAIR10	AT1G12580.1	6E-161	phosphoenolpyruvate carboxylase-related kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	99011044	99012779	+
GWHAAZE00000001	mRNA	99011044	99012779	+
GWHAAZE00000001	exon	99011044	99011632	+
GWHAAZE00000001	exon	99011716	99012012	+
GWHAAZE00000001	exon	99012127	99012779	+
GWHAAZE00000001	CDS	99011044	99011632	+
GWHAAZE00000001	CDS	99011716	99012012	+
GWHAAZE00000001	CDS	99012127	99012779	+

Transcript Sequence
>GWHTAAZE003500 ATGGCTGTTGCCAAGAACAGCAGCACTACTGAATCATCTTTTAGGCCCTTCAATTGCTACAAAGTTGAAAGCTTAAATGAATCCATTTTGGACACAAATCAGACTTCGAATTTGAAAGATCAATATGTTCTTGGAGAGGAATTGGGCTGGGGTCAGTTTGGAGTTATAAGGGCATGCTCCGATAAATTGACTGGAGAATTACTGGCATGCAAATCAATCGCTAAGGATAGATTGGTCACCGAGAGTGATGTGAAGAGCATCAAGCTTGAGATTGAAATAATGAATAGGTTATCTGGGCACCCGAATGTTGTAGATCTCAAGGCTGTTTATGAGGAAGAAGATTTTGTTCATTTGGTGATGGAGCTGTGTGCAGGAGGAGAGCTTTTCCATCAATTAGAGAAGCAGGGGAGATATTCTGAGGCTGAGGCCAGGGTTCTATTTAGGCAATTGATGCAAGTGGTGATGTATTGCCATGATAAGGGTGTTGTTCATCGAGATCTGAAGCCTGAGAACATTCTCTTGGCCACAAAAGCTGTATCTTCACCGATTAAATTGGCTGATTTTGGTCTTGCAACGTATATCGAACCAGGACAGAGTTTGCATGGTACAGTGGGTAGTCCATTTTATATAGCTCCAGAGGTATTGGCCGGAGGGTACAATCAGTCAGCTGATGTGTGGAGTGCCGGGGTTATTCTTTATATTCTGCTTAGTGGGATGCCACCTTTTTGGGGGAAGACTAAGTCTCGAATATTTGGGGCAGTTAAGGCAGCTAATTTGCAGTTCCGGTGTGACCCCTGGGATCATATATCTCATTCTGCAAAGGAATTAATTAGGGGAATGCTTTGTACAGATCCTTCTCGTAGGCTCACAGCTCAGCAAGTTCTAGATCACACATGGACAAACAACTTTACATCACCTACCAAGGAATCTTGTGAACATGAAAAGCAAAGATTTGGAGTCTTGGATATGGACGGAGTGCCTCGAAGCTCTTTCTCTGCCCCATCTATGGAAAGGAATCGGGATATTAGTTTTGGCAATGGGTCACCTATTACTCGCGACTCCCAGTCGCCTGCACTCGCTTACAAATCATCATTTTCTTCTTTCATGGTGGAGCCATCAACACCTATGCTGGACCTTGGTGGTTTTTCTTTCTCTAGCAACGGTGGATCAAATTCTACCAAGGAATTTTCTATGCCTGTCCTCACAATGTCAAGCTTTGCATTCTTCAGCCCAGTTAGTGAGCAAGTGAATTGTGCATTTGATTTGTCAGCCAACATATGTAGAGTTGATTCAGTTTGTAGAGGCAATATGATTGAGAATTCTTCTCTCCATTCCGAGCATGAAGCAGCTGATGAGGTTAAAAGGGAAGGAGGAACAAGTGGTTATAGAATGTCAGTTATTCACAGTAAGAGGAATCGCACAATTGGGCTAGGTGAAGTTGAACAGCTTGACTTTATGGCAACTGTATCAGTTATTCGCTGGGCATCATGCACACATCTACCTACTGCCACATCACTTAGGTCTTCTCTCGTCTGTTGA

Network for GWHGAAZE003494

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	42	299	7.80E-72

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.155
	SRR3591706	second leaf	10.229
	SRR3591707	mature leaf	20.464
	SRR3591708	Shoot apex	25.867
	SRR3591709	Stem	26.625
	SRR3591710	White floral bud	21.743
	SRR3591711	White flower	27.073
	SRR3591712	Green floral bud	23.220
	SRR3591713	Yellow flower	12.492
SRP173429	SRR8316895	Juvenile bud stage	14.643
	SRR8316896	Juvenile bud stage	19.898
	SRR8316897	Juvenile bud stage	7.903
	SRR8316894	Third green stage	7.710
	SRR8316900	Third green stage	21.326
	SRR8316901	Third green stage	17.185
	SRR8316898	Complete white stage	6.357
	SRR8316899	Complete white stage	35.994
	SRR8316903	Complete white stage	12.494
	SRR8316902	Silver flowering stage	5.696
	SRR8316904	Silver flowering stage	7.583
	SRR8316905	Silver flowering stage	3.541
	SRR8316906	Gold flowering stage	15.140
	SRR8316907	Gold flowering stage	16.057
	SRR8316908	Gold flowering stage	11.369
SRP132670	SRR6706286	Control	12.795
	SRR6706287	Light intensity 50%	14.191
	SRR6706288	Light intensity 20%	15.854
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.460
	CNS0095593	Slightly white alabastrum(diploid) 2	12.542
	CNS0095594	Slightly white alabastrum(diploid) 3	10.178
	CNS0095595	Whole white alabastrum(diploid) 2	13.596
	CNS0095596	Whole white alabastrum(diploid) 3	8.289
	CNS0095597	Whole white alabastrum(diploid) 4	10.714
	CNS0095598	Silvery flower (diploied) 1	36.652
	CNS0095599	Silvery flower (diploied) 2	27.188
	CNS0095600	Silvery flower (diploied) 3	26.858
	CNS0095601	Golden flower (diploid) 1	34.024
	CNS0095602	Golden flower (diploid) 2	39.788
	CNS0095603	Golden flower (diploid) 3	40.304
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.849
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.967
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.501
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.140
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.625
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.560
	CNS0095610	Silvery flower (tetraploid) 1	20.827
	CNS0095611	Silvery flower (tetraploid) 2	33.192
	CNS0095612	Silvery flower (tetraploid) 3	15.894
	CNS0095613	Golden flower (tetraploid) 1	10.971
	CNS0095614	Golden flower (tetraploid) 2	17.286
	CNS0095615	Golden flower (tetraploid) 3	12.993
CRA001975	CRR073297	Stem 1	29.825
	CRR073298	Stem 2	28.029
	CRR073299	Stem 3	30.619
	CRR073300	Leaf 1	31.008
	CRR073301	Leaf 2	25.758
	CRR073302	Leaf 3	21.360
	CRR073303	Juvenile bud 1	25.689
	CRR073304	Juvenile bud 2	16.401
	CRR073305	Juvenile bud 3	33.157
	CRR073306	Third green 1	4.035
	CRR073307	Third green 2	4.142
	CRR073308	Third green 3	5.821
	CRR073309	Second white 1	7.015
	CRR073310	Second white 2	7.397
	CRR073311	Second white 3	7.895
	CRR073312	Silver flowering 1	3.771
	CRR073313	Silver flowering 2	4.804
	CRR073314	Silver flowering 3	4.041
	CRR073315	Gold flowering 1	11.176
	CRR073316	Gold flowering 2	13.749
	CRR073317	Gold flowering 3	19.862
	CRR073318	Tawny withering 1	30.408
	CRR073319	Tawny withering 2	25.539
	CRR073320	Tawny withering 3	30.863