Gene detail

Detail information of GWHGAAZE003481

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006362688.1	0	PREDICTED: putative protein kinase [Solanum tuberosum]
COG	YP_004581867.1	0.000003	serine/threonine protein kinase
Swissprot	tr\|O64639\|Y2559_ARATH	2E-115	Receptor-like serine/threonine-protein kinase At2g45590
trEMBL	tr\|M1AC87\|M1AC87_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400019551}
TAIR10	AT2G45590.1	3E-87	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98663505	98665505	+
GWHAAZE00000001	mRNA	98663505	98665505	+
GWHAAZE00000001	exon	98663505	98663886	+
GWHAAZE00000001	exon	98664223	98665505	+
GWHAAZE00000001	CDS	98663505	98663886	+
GWHAAZE00000001	CDS	98664223	98665505	+

Transcript Sequence
>GWHTAAZE003487 ATGCCATCTCGATCAATTACCCCACCGCTCTCTCCGACCCCATCTCCACCGCCCCTCCACCACCACCGCCGCCAGTATATCCCCCCCGTTGCCGGCGGCGTGGTCGCAGCCTTCTCCCTCCTCCTAGCCCTAACCCTCTGCTTCCGCAAGCTCTCCCGCAAACGCACTGCCCCTTCCGATTCCAAGCCCCCGCACCGCTTCTCCTACTCCGACCTCCGCTCTGCCACCTCCTCCTTCTCCCCATCCCACCGCCTCGGCCAAGGCGGTTTCGGCTCTGTCTACCGTGGTACACTCGCCAACAATCAAAACGTCGCTGTCAAACTCATGGACTCCGGTTCTCTCCAAGGAGAGCGCGAGTTCCAAAACGAACTCTTCTTCGCCGTGAATGGTGTCGGGGGAGCAGAGGATAATGGATCTGTGATTGAAGAGACGGAGAGTGTAACTACCACCTGTTTGGAAGAATTCAATGCCGGAATTGATCAATCGCCGGAGAGTTCTGTTATGATTAAGGTTATGGAGGCGTCGCCGGAGACGGTTATTGAAACGGAGGCATCGCCGAGAACGGTTTTGGCGGTGGCATCACCGTCCGAGGGTTTGGACAAGGGGAGTGTATCGGAGGGGAATTTCGATGGGGTTAGTGTGGAGAGTTCTTCTGGTATGAAGAGGAGTGGGAGGCGAAAGAAGAATTCTTCTGGGAAGGATTGGTGGTGGAAACAAGAAAATAATGGAGCGGAGACTGGGGTTGTAAAGGATTATGTGATGGAATGGATTGGGACTGAGATTAAGAAGGAGAGGCCGAAGAGCGAATGGATTACAGCTTCTTCGAGTTCCAGTCTGGTAGGAAAATCAGAGAAGAAGAAGAAAAAGAATCGGAGGCGTTTGGATTGGTGGGTATCGTTGGATGAGGAGAAGGTTGTGAAGAAAGAGAAGAGAAGGCCAGCAAGGGAGTGGTGGAAGGAGGAATATTGTGAAGAACTTGCAAGAAAGAAAAAGAAGAAGAAAGAACAAGCATCAACAATTGATGCTGTCAATTTTGACAATTATTGGCCAAGGGATGAAGATATGTATATGGACAAAAAGAAGAAGAGGAGGAGCCGGAGCCGTGGCAGTCGAGGCAGCGTAGATTGGTGGTTAGATGGGCTTAGTGGTGAGCTCTGGCGGTCCCGCCACAATAGCCATGATTCTGTGAGCGGAGATATAGCTAAAAGTGGTGGTATTAGCAGTACTCCCAGTATGAGGGGAACTGTTTGTTATATTGCCCCAGAGTATTCCGGTAGTGGGGATCTTTCAGAGAAATGTGATGTTTATAGCTTTGGGGTTCTTTTGCTAGTTGTAATTGCAGGGCGTAGGCCACTTCAAGTATCGGGCTCACCTATGTCTGAATTTCAACGCGCCAATCTTTTATCTTGGGCTCGGCATCTTGCCCGTGCTGGGAAGTTGCTTGATCTTGTTGATCAGTCTATTCAATCTTTGAATAGAGAAGAAGCTTTAATGTGTATTACAGTAGCACTTTTGTGCCTTCAGAAGTCACCTGCACTACGACCTTCAATGAAAGAGGTTGTGGGGATGCTTTCGGGAGAATTGGAACCTCCCCGGTTACCAGTTGAACTTTCCCCTTCGCCTCCTTCACGTTTCCCTTTGAAATCTCGTAAGAAGGTCCGGTGA

Network for GWHGAAZE003481

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	409	521	6.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.966
	SRR3591706	second leaf	11.751
	SRR3591707	mature leaf	15.854
	SRR3591708	Shoot apex	8.680
	SRR3591709	Stem	12.202
	SRR3591710	White floral bud	18.119
	SRR3591711	White flower	16.662
	SRR3591712	Green floral bud	12.991
	SRR3591713	Yellow flower	5.585
SRP173429	SRR8316895	Juvenile bud stage	7.111
	SRR8316896	Juvenile bud stage	8.748
	SRR8316897	Juvenile bud stage	3.126
	SRR8316894	Third green stage	3.822
	SRR8316900	Third green stage	9.177
	SRR8316901	Third green stage	10.533
	SRR8316898	Complete white stage	2.817
	SRR8316899	Complete white stage	10.037
	SRR8316903	Complete white stage	5.278
	SRR8316902	Silver flowering stage	3.061
	SRR8316904	Silver flowering stage	3.870
	SRR8316905	Silver flowering stage	2.285
	SRR8316906	Gold flowering stage	5.961
	SRR8316907	Gold flowering stage	6.626
	SRR8316908	Gold flowering stage	10.525
SRP132670	SRR6706286	Control	12.593
	SRR6706287	Light intensity 50%	11.555
	SRR6706288	Light intensity 20%	10.951
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.586
	CNS0095593	Slightly white alabastrum(diploid) 2	14.485
	CNS0095594	Slightly white alabastrum(diploid) 3	14.801
	CNS0095595	Whole white alabastrum(diploid) 2	12.977
	CNS0095596	Whole white alabastrum(diploid) 3	13.315
	CNS0095597	Whole white alabastrum(diploid) 4	12.968
	CNS0095598	Silvery flower (diploied) 1	15.756
	CNS0095599	Silvery flower (diploied) 2	12.229
	CNS0095600	Silvery flower (diploied) 3	11.081
	CNS0095601	Golden flower (diploid) 1	10.597
	CNS0095602	Golden flower (diploid) 2	11.570
	CNS0095603	Golden flower (diploid) 3	11.289
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.975
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.556
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.207
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.582
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.912
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.193
	CNS0095610	Silvery flower (tetraploid) 1	10.710
	CNS0095611	Silvery flower (tetraploid) 2	9.236
	CNS0095612	Silvery flower (tetraploid) 3	13.935
	CNS0095613	Golden flower (tetraploid) 1	5.888
	CNS0095614	Golden flower (tetraploid) 2	10.583
	CNS0095615	Golden flower (tetraploid) 3	6.746
CRA001975	CRR073297	Stem 1	11.448
	CRR073298	Stem 2	10.853
	CRR073299	Stem 3	10.731
	CRR073300	Leaf 1	13.636
	CRR073301	Leaf 2	15.467
	CRR073302	Leaf 3	8.628
	CRR073303	Juvenile bud 1	15.279
	CRR073304	Juvenile bud 2	8.211
	CRR073305	Juvenile bud 3	14.111
	CRR073306	Third green 1	9.405
	CRR073307	Third green 2	13.561
	CRR073308	Third green 3	15.096
	CRR073309	Second white 1	10.666
	CRR073310	Second white 2	6.178
	CRR073311	Second white 3	6.823
	CRR073312	Silver flowering 1	6.360
	CRR073313	Silver flowering 2	7.989
	CRR073314	Silver flowering 3	7.482
	CRR073315	Gold flowering 1	11.443
	CRR073316	Gold flowering 2	12.693
	CRR073317	Gold flowering 3	14.321
	CRR073318	Tawny withering 1	25.320
	CRR073319	Tawny withering 2	27.218
	CRR073320	Tawny withering 3	19.515