Gene detail

Detail information of GWHGAAZE003468

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009791302.1	0	PREDICTED: somatic embryogenesis receptor kinase 4 [Nicotiana sylvestris]
COG	YP_001192956.1	4E-28	two component regulator
Swissprot	tr\|Q8RY65\|NIK2_ARATH	7E-76	Protein NSP-INTERACTING KINASE 2 (Precursor)
trEMBL	tr\|M1C3Z5\|M1C3Z5_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400059219}
TAIR10	AT5G51560.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98400629	98403490	+
GWHAAZE00000001	mRNA	98400629	98403490	+
GWHAAZE00000001	exon	98400629	98401073	+
GWHAAZE00000001	exon	98401475	98401735	+
GWHAAZE00000001	exon	98401838	98402707	+
GWHAAZE00000001	exon	98402873	98403490	+
GWHAAZE00000001	CDS	98400629	98401073	+
GWHAAZE00000001	CDS	98401475	98401735	+
GWHAAZE00000001	CDS	98401838	98402707	+
GWHAAZE00000001	CDS	98402873	98403354	+
GWHAAZE00000001	three_prime_UTR	98403355	98403490	+

Transcript Sequence
>GWHTAAZE003474 CCAAAACCAAAAAACATGGGTATTCCAAAATATATGTTCTATCTCCTCACGATCTTCACTCTCTCTTATATTCCAACTGCTTGTGGAAACGCTGAGCTGAAAGCTCTCATGGATATGAAGGCCAGTCTCGACCCAGAAAACAAGCTTCTCGCATCATGGACCCTTTTTGGTCACCCTTGTGATGGTTCATTAGAAGGTGTAATGTGTAATGAGGAGGGTCAGGTTGGTAACATTTCTTTGCAGGGTAAAGGTCTCTACGGCAAGCTCTCACCGGCCATTGCTGGCCTCAAGAACTTGACTGGCCTGTACCTGCATTACAACTCTTTGTATGGAGAGATACCTAGAGAGATTTCCACCTTGACTAGGCTCACTGATCTATATCTCAACGTCAATAATTTATCTGGGAACATACCTTCTGAACTTGGAAACATGGCTAGTTTACAAGTTTTGCAGCTCTGTTATAACCAGTTCACTGGAAGCATACCTACACAGCTGGGGTCTCTGAAAAATCTTGCTGTTCTTGCTCTCCAATCTAACCAGCTGGCTGGTGCAATCCCTGCAAGTTTGGGAGATTTGGGAATGCTGATGAGGCTAGATTTGAGTTATAATCGCCTTTTTGGCTCAATTCCTACAAAACTAGTCGATGCTCCTCTTCTTCAAGTTCTAGATGTTCGAAATAATACACTCTCCGGCAATGTACCTCCTGCTTTGAGGAGATTAGTTGGAGGATTCCAATATGAAAATAACCCAGGACTATGCGGAGTTGGTTTTTCAACTTTGAGGGCTTGCGGTACTTCAGACAACTTGAATCCAAACAGGCCGCAACCTTATGAAGGTGGAGCATCTGGCCTATCAACAAAAGACATACCAGAGACAGCTAATTTGAAGTTGAATTGTACCCAAACCCGATGCTCAAATTCGCCTAAAACCCCACAATCCTCAATTGTTGTTGGAGTAATTGTGGTTACTGTTGCACTATCAGTTGTAGGACTAGTGACCCTTTTGCACTATCGTCGTCGAAAACAGAAGCTTAGCAGCACATTTGGTATATCCGATAGCCGTCTTAGTACTGAGGTCAAGGAGGTTCACAGGAAGAACGGGTCTCCTCTAATCAGTCTTGAGTACTCTAGTGGGTGGGACCCTTTGGCTGAGGGTCGGCATTTTGGTGGACTCTCCCAAGAGGCTTTGCAGAGCTTTAGGTTTAATTTGGAAGAGGTACAAGCAGCTACTCGGTACTTTGCAGAAAAGAATTTGTTGGGTAAGAGCAAATTTTCGAAGATCTATAAAGGAACCCTAAGAGATGGATCCGCTGTTGCTATTAAGAGCATCACCAAAGCTAGTTGCAAATCAGAGGAAGCCGAGTTCTTGAAGGGACTCAACATCTTGACCTCCTTGAGACATGAACATCTAGTTAGGTTGAGAGGATTTTGCTGCTCAAAAGGCCGGGGCGAGTGTTTTCTTATTTATGATTTTGTTCCAAACGGAAATTTGGTGCCATATCTTGACACAAAGGGGGAAGGTAGTCCAGTACTCAAATGGTCCACTAGAGTTTCAATCATCAATGGCATTGCCAAAGGGATAGAGTATTTACATGGGTGCAAGGTCAACAAGCCAGCTCTAGTTCACCAAAACATATCGGCAGGTAATGTGCTCATTGATCGGCAATTCAAACCCCTACTTTCTGATTCGGGTTTGCACAAGCTTCTTACAAATGACACAGTCTACTCGGCACTCAAGGCCAGTGCGGCCATGGGATATCTAGCTCCTGAGTATACCACTATAGGCCGTTTTACAGATAAAAGTGACGTTTACGCTTTTGGAGTGCTTGTTTTCCAAATCCTCTCTGGGAAACGAAATGTCACCAGTTCAATGCGTGTTGCTGCTGAATTCTGCAAGTACCATGATTTTATTGATACAAATGTTCATGCCAATTTCTCTGAACATGAAGCTGCAAAACTTGCTAAAGTTGCTTTGATTTGCACCCATGAGTCTCCTGAGGAGAGGCCATCTATGGAAGCAATTGTACAAGAACTTAGTAACAATACTAACTGTTTGTGATTCCCATGACTTATTTGTTTTCTTTCTCTTAAGCTATTGGCTGAGAAATTTTCAGAGGGTAGTCATAGTTGTAGGCAGTAGAAGATACATCGCTACTAACCTCCTCACTAGCGGTGAGTCTTGTAACTTGGGATTC

Network for GWHGAAZE003468

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	30	70	1.00E-05
PF07714.18	PK_Tyr_Ser-Thr	416	678	1.00E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-IV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.178
	SRR3591706	second leaf	8.455
	SRR3591707	mature leaf	1.822
	SRR3591708	Shoot apex	27.390
	SRR3591709	Stem	14.110
	SRR3591710	White floral bud	5.522
	SRR3591711	White flower	1.194
	SRR3591712	Green floral bud	7.120
	SRR3591713	Yellow flower	0.058
SRP173429	SRR8316895	Juvenile bud stage	3.319
	SRR8316896	Juvenile bud stage	2.041
	SRR8316897	Juvenile bud stage	0.928
	SRR8316894	Third green stage	1.579
	SRR8316900	Third green stage	3.301
	SRR8316901	Third green stage	2.328
	SRR8316898	Complete white stage	0.367
	SRR8316899	Complete white stage	2.870
	SRR8316903	Complete white stage	0.786
	SRR8316902	Silver flowering stage	0.271
	SRR8316904	Silver flowering stage	0.207
	SRR8316905	Silver flowering stage	0.124
	SRR8316906	Gold flowering stage	0.117
	SRR8316907	Gold flowering stage	0.566
	SRR8316908	Gold flowering stage	0.484
SRP132670	SRR6706286	Control	2.076
	SRR6706287	Light intensity 50%	2.376
	SRR6706288	Light intensity 20%	2.100
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.704
	CNS0095593	Slightly white alabastrum(diploid) 2	4.021
	CNS0095594	Slightly white alabastrum(diploid) 3	3.303
	CNS0095595	Whole white alabastrum(diploid) 2	2.846
	CNS0095596	Whole white alabastrum(diploid) 3	1.902
	CNS0095597	Whole white alabastrum(diploid) 4	2.513
	CNS0095598	Silvery flower (diploied) 1	2.246
	CNS0095599	Silvery flower (diploied) 2	2.310
	CNS0095600	Silvery flower (diploied) 3	1.466
	CNS0095601	Golden flower (diploid) 1	1.093
	CNS0095602	Golden flower (diploid) 2	0.645
	CNS0095603	Golden flower (diploid) 3	0.826
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.833
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.589
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.663
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.864
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.070
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.015
	CNS0095610	Silvery flower (tetraploid) 1	0.636
	CNS0095611	Silvery flower (tetraploid) 2	0.602
	CNS0095612	Silvery flower (tetraploid) 3	0.726
	CNS0095613	Golden flower (tetraploid) 1	0.113
	CNS0095614	Golden flower (tetraploid) 2	0.274
	CNS0095615	Golden flower (tetraploid) 3	0.193
CRA001975	CRR073297	Stem 1	5.067
	CRR073298	Stem 2	5.616
	CRR073299	Stem 3	5.494
	CRR073300	Leaf 1	4.997
	CRR073301	Leaf 2	5.163
	CRR073302	Leaf 3	4.625
	CRR073303	Juvenile bud 1	4.913
	CRR073304	Juvenile bud 2	1.588
	CRR073305	Juvenile bud 3	6.229
	CRR073306	Third green 1	0.550
	CRR073307	Third green 2	0.645
	CRR073308	Third green 3	0.616
	CRR073309	Second white 1	0.349
	CRR073310	Second white 2	0.756
	CRR073311	Second white 3	0.232
	CRR073312	Silver flowering 1	0.235
	CRR073313	Silver flowering 2	0.191
	CRR073314	Silver flowering 3	0.046
	CRR073315	Gold flowering 1	1.480
	CRR073316	Gold flowering 2	2.542
	CRR073317	Gold flowering 3	2.188
	CRR073318	Tawny withering 1	8.807
	CRR073319	Tawny withering 2	7.897
	CRR073320	Tawny withering 3	5.472