Gene detail

Detail information of GWHGAAZE003457

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009799202.1	0	PREDICTED: probable pectinesterase/pectinesterase inhibitor 59 [Nicotiana sylvestris]
COG	YP_003389564.1	8E-51	pectinesterase
Swissprot	tr\|Q9FHN4\|PME60_ARATH	0	Pectinesterase 60 (Precursor)
trEMBL	tr\|M1BJ46\|M1BJ46_SOLTU	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT5G51500.1	1E-177	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98210888	98213239	-
GWHAAZE00000001	mRNA	98210888	98213239	-
GWHAAZE00000001	exon	98210888	98211582	-
GWHAAZE00000001	exon	98212339	98213239	-
GWHAAZE00000001	CDS	98212339	98213239	-
GWHAAZE00000001	CDS	98210888	98211582	-

Transcript Sequence
>GWHTAAZE003463 ATGGCAAAAATACTTGGATTAATGTTGTTCATATGTACGATATCATTTTCATCTTCATTCTCTCAATCAGTAGAAGATGAACCGTCAGAAAATATCACCGAATGGTGCAAAACGACACCGCATCCAGGGCCCTGCAACTACTTCATGGGCAGGCACCACAAGCAATTCAGGCCTAAAGAGAGAGGCGATTTTCGCACATTGGCGGTCGAAGTAGCACTGGAGCGTGCACTCCACGCGCAAACTTGCACACAGGGTCTCAAGAAGTACTGCAAGAGTAAACGAAAGAAGGGCGCATGGAACGACTGCTCCAAGCTCTACGACAACACAGTCCAGTTGCTCAACCAGACCCTCGAGGGCTTAAGGGCAAATGGCACCAATTGCTCCGATTTCGATGCACAGACATGGCTGAGCGCCGCTCTCACCAATCTCGAGACGTGTCGATCCGGGTCCCAAGAACTAAACGTGACCAAATTTATATCCCCGATAGTGTCGAATTATAATGTGACCGAATTGATTAGCAATAGTTTGGCAATTAACGGGGGATTGTTGCAGCAGCAGCAAAACGAGAGTAATGATGGGTTTCCTAATTGGGTGACTGCGGGGGAAAGGAAATTGCTGCAAACGGAGTCGTTGGCTACAAGTTCGGCAAATGTGGTAGTGGCTAAGGATGGTACCGGAAGGTTCCGGACCATTCAGGCCGCGATTAATTATGTAGAGGGACTCAGGAGGGGGACGGGGAGGTTTTTAATATATGTTAAGCGAGGAGTTTATAAGGAGAATATCGAGATTAGTAATAAGGTTCCTAAGCTTATGCTGGTTGGTGATGGGTTGAGGTACACTATTATCACCAGTGGCCGAAGTGTTGCCGGGGGATTTACGACATACAGTTCTGCTACTGTTGGCGTTGACGGAATTGGGTTTATAGCCCGAGGCATAACATTCCGTAACACGGCCGGCCCAGCCAATGGCCAAGCGGTGGCCCTCCGATCAGCCTCCGACCTCTCTGTCTACTATGCTTGTAGCTTCGAAGGCTACCAAGACACACTATTCGTACTTGCACAACGCCAATTCTACAAATCATGTTACATTTATGGCACCATCGACTTCATCTTTGGCAACGCAGCTGTCGTTTTCCAAAACTGCATGATCCTCGTTCGTAGACCCTTACAAGGCCAGGTCAATGTCATCACCGCCCAAGGCCGAGGCGATCCCTACCAGAACACCGGAATCTCAATCCACAACTCTAGGGTAGCGGCAGCCCCGGATCTCCGGCCGGTAGTCCGTTCTTTCCAGACTTACTTGGGCAGGCCTTGGCAGCAGTATTCCCGGACGGTTTTCATTAAGACTTATTTGGATAGTTTGGTGAACCCGGCCGGGTGGTTAGCATGGCAAAATAGTAATTTTGCATGGGAAACTTTGTATTATGGGGAATATGGGAATATTGGGCCTGCGGCGTCTACGAGGTATAGGGTGAAATGGAAGGGTTATCATGTACTTACGAGTGCCAACGTGGCATCCAGGTTTACTGTTGCTAATCTTATTGCCGGTCGGGCATGGCTACCGGCTACTGGTGTGCCGTTTATCGCAGGATTGTGA

Network for GWHGAAZE003457

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	32	178	4.20E-26
PF01095.20	Pectinesterase	217	516	3.00E-127

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity
GO:0004857	molecular_function	enzyme inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.160
	SRR3591706	second leaf	0.367
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.277
	SRR3591709	Stem	0.090
	SRR3591710	White floral bud	0.067
	SRR3591711	White flower	4.353
	SRR3591712	Green floral bud	0.083
	SRR3591713	Yellow flower	9.646
SRP173429	SRR8316895	Juvenile bud stage	3.412
	SRR8316896	Juvenile bud stage	1.905
	SRR8316897	Juvenile bud stage	0.605
	SRR8316894	Third green stage	0.068
	SRR8316900	Third green stage	0.053
	SRR8316901	Third green stage	0.245
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	1.480
	SRR8316907	Gold flowering stage	2.067
	SRR8316908	Gold flowering stage	4.741
SRP132670	SRR6706286	Control	0.231
	SRR6706287	Light intensity 50%	0.015
	SRR6706288	Light intensity 20%	0.088
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.149
	CNS0095593	Slightly white alabastrum(diploid) 2	0.196
	CNS0095594	Slightly white alabastrum(diploid) 3	0.648
	CNS0095595	Whole white alabastrum(diploid) 2	0.146
	CNS0095596	Whole white alabastrum(diploid) 3	0.026
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.166
	CNS0095599	Silvery flower (diploied) 2	0.054
	CNS0095600	Silvery flower (diploied) 3	0.034
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	2.912
	CNS0095603	Golden flower (diploid) 3	2.338
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.062
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.148
	CNS0095610	Silvery flower (tetraploid) 1	1.557
	CNS0095611	Silvery flower (tetraploid) 2	0.542
	CNS0095612	Silvery flower (tetraploid) 3	0.380
	CNS0095613	Golden flower (tetraploid) 1	2.772
	CNS0095614	Golden flower (tetraploid) 2	7.267
	CNS0095615	Golden flower (tetraploid) 3	4.192
CRA001975	CRR073297	Stem 1	7.086
	CRR073298	Stem 2	3.018
	CRR073299	Stem 3	2.295
	CRR073300	Leaf 1	0.280
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.089
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.110
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.074
	CRR073308	Third green 3	0.024
	CRR073309	Second white 1	0.040
	CRR073310	Second white 2	0.389
	CRR073311	Second white 3	0.293
	CRR073312	Silver flowering 1	4.303
	CRR073313	Silver flowering 2	8.468
	CRR073314	Silver flowering 3	5.735
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.066
	CRR073320	Tawny withering 3	0.000