Gene detail

Detail information of GWHGAAZE003456

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO65446.1	0	hypothetical protein CISIN_1g010103mg [Citrus sinensis]
COG	YP_004596660.1	7E-52	Pectinesterase
Swissprot	tr\|O04887\|PME2_CITSI	0	Pectinesterase 2 (Precursor)
trEMBL	tr\|A0A067FQH6\|A0A067FQH6_CITSI	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT2G45220.1	0	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98170434	98172525	-
GWHAAZE00000001	mRNA	98170434	98172525	-
GWHAAZE00000001	exon	98170434	98171125	-
GWHAAZE00000001	exon	98171676	98172525	-
GWHAAZE00000001	CDS	98171676	98172525	-
GWHAAZE00000001	CDS	98170434	98171125	-

Transcript Sequence
>GWHTAAZE003462 ATGGCGGTCAAGCTGGCCTTAATCATACTATTCATTTCCATCACTTTATCATTCTCACCAGCCCTGTCCAACGACGTGGACTGGTGGTGCAACCAAACCCCAAACCCTGAACCCTGCAAATATTTTATGAGACACGGTCCACACCATTTTGCACCCAAACATAAATCCGATTTCAAAAAAATGGCAGTCCAAATAGCCTTGGAGAGAGCCGTCACAGCTGCGGGCCACACCAAAGGGCTCGGTCCAAAGTGCCGTAACGAGCGCGAAAAAGTCGCTTGGGCCGACTGCTTGAGTCTCTACCAGAGCACCATTATTCAGCTCAACCAAACACTAGACCCCAACACAAAGTGCACCGATTTCGATGCCCAAACATGGCTCAGCACGGCCTTGACCAACCTTGAGACGTGTCGGGCTGGGTTTGTTGAATTAGGTGCCTCGGATTTCATTTTGCCACTCATGTCAAATAATGTTACAAAGCTGATTAGTAACACTCTGGCTTTTAATAATGGGACCACGGAGAAAATGACTTATAAAGGTGGGTTTCCTAGTTGGGTTAAGCCAGGTGACCGGAAGTTGTTGCAGTCATCGGGACAGGCAGCTAACGTGGTGGTGGCTCAAGATGGGTCAGGGAATTATAAGACTATCAAGGAGGCGATTGACGCAGCAGGTAAGAGGAGTGGGAGTGGGAGGTTTGTTATACGTGTGAAAGCTGGTGTTTATAGGGAGAATCTTGTGATTGGTAACAAATTGAAGAATATTATGCTTGTTGGTGATGGATTAAGGTACACAATTATCACGGGTAGCCGGAGTGTTGGAGGAGGTTCCACCACCTTTAACTCTGCAACTGTTGCTGTCACCGGGGAAGGATTCATAGCACGCGGCATAACATTCCGTAACACCGCCGGTCCACAAAACCACCAAGCCGTGGCACTCCGATCGGGCTCCGACTTCTCAGTCTTCTACCGATGCGGCTTCGAAGGGTACCAAGACACACTCTATGCCCACTCTCAACGCCAATTTTACAAAGAATGCTATATTTACGGCACTGTCGACTTCATCTTCGGAAATGCTGCCGTTGTTCTGCAAAATTGTATGATATATGGAAGGAGACCAATGTCCGGTCAACAAATCACTATCACGGCCCAAGGCCGAACCGACCCTAACCAAAACACCGGCATTTCAATCCACGACTCTCGGGTCATGGCTGCACCAGACCTAAAACCGGTCCTAAGTTCGTTTAGGACATACTTGGGCCGACCCTGGAAGCAATATTCTCGTACGGTTTATCTTCAGAACTATTTCGAGAGCTTGGTCAATCCGGCAGGGTGGTTAGAGTGGGATGGTAACTTTGCTCTTAATACTTTGTACTATGGTGAGTATAAAAATTTGGGGCCGGGTTCTTCCACGAGCAGGAGAGTTAAGTGGGGAGGGTATCGCGTTATAACGAGTGCGACTGAGGCAGCGCAGTTCAGCGTTGCTAATTTTATTGCCGGCCAGTCGTGGTTGTCGGCTACCAGTGTGCCTTTTACTTCTGGTCTTTGA

Network for GWHGAAZE003456

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	25	166	2.60E-25
PF01095.20	Pectinesterase	201	498	9.20E-143

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity
GO:0004857	molecular_function	enzyme inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.061
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.167
	SRR3591709	Stem	14.418
	SRR3591710	White floral bud	0.184
	SRR3591711	White flower	0.390
	SRR3591712	Green floral bud	0.184
	SRR3591713	Yellow flower	0.913
SRP173429	SRR8316895	Juvenile bud stage	0.317
	SRR8316896	Juvenile bud stage	0.146
	SRR8316897	Juvenile bud stage	0.440
	SRR8316894	Third green stage	0.148
	SRR8316900	Third green stage	0.057
	SRR8316901	Third green stage	0.267
	SRR8316898	Complete white stage	0.240
	SRR8316899	Complete white stage	1.766
	SRR8316903	Complete white stage	0.224
	SRR8316902	Silver flowering stage	0.638
	SRR8316904	Silver flowering stage	0.744
	SRR8316905	Silver flowering stage	0.464
	SRR8316906	Gold flowering stage	6.158
	SRR8316907	Gold flowering stage	3.345
	SRR8316908	Gold flowering stage	21.050
SRP132670	SRR6706286	Control	1.063
	SRR6706287	Light intensity 50%	2.242
	SRR6706288	Light intensity 20%	0.621
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.112
	CNS0095593	Slightly white alabastrum(diploid) 2	1.025
	CNS0095594	Slightly white alabastrum(diploid) 3	0.385
	CNS0095595	Whole white alabastrum(diploid) 2	0.872
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.299
	CNS0095598	Silvery flower (diploied) 1	0.877
	CNS0095599	Silvery flower (diploied) 2	1.805
	CNS0095600	Silvery flower (diploied) 3	1.073
	CNS0095601	Golden flower (diploid) 1	1.537
	CNS0095602	Golden flower (diploid) 2	1.560
	CNS0095603	Golden flower (diploid) 3	1.602
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.038
	CNS0095610	Silvery flower (tetraploid) 1	0.449
	CNS0095611	Silvery flower (tetraploid) 2	0.053
	CNS0095612	Silvery flower (tetraploid) 3	0.543
	CNS0095613	Golden flower (tetraploid) 1	2.219
	CNS0095614	Golden flower (tetraploid) 2	1.430
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.166
	CRR073298	Stem 2	0.040
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.063
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.406
	CRR073306	Third green 1	0.298
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.495
	CRR073309	Second white 1	0.918
	CRR073310	Second white 2	1.157
	CRR073311	Second white 3	1.164
	CRR073312	Silver flowering 1	7.927
	CRR073313	Silver flowering 2	4.182
	CRR073314	Silver flowering 3	3.306
	CRR073315	Gold flowering 1	0.289
	CRR073316	Gold flowering 2	0.446
	CRR073317	Gold flowering 3	4.090
	CRR073318	Tawny withering 1	7.234
	CRR073319	Tawny withering 2	29.847
	CRR073320	Tawny withering 3	4.683