Gene detail

Detail information of GWHGAAZE003454

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264986.2	2.0162E-168	PREDICTED: NAC domain-containing protein 7-like [Vitis vinifera]
Swissprot	tr\|Q9FWX2\|NAC7_ARATH	2E-119	NAC domain-containing protein 7
trEMBL	tr\|A0A068UAL7\|A0A068UAL7_COFCA	7E-168	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05322.1}
TAIR10	AT1G12260.1	2E-88	NAC 007

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98150865	98152305	-
GWHAAZE00000001	mRNA	98150865	98152305	-
GWHAAZE00000001	exon	98150865	98151509	-
GWHAAZE00000001	exon	98151653	98151888	-
GWHAAZE00000001	exon	98152146	98152305	-
GWHAAZE00000001	CDS	98152146	98152305	-
GWHAAZE00000001	CDS	98151653	98151888	-
GWHAAZE00000001	CDS	98150865	98151509	-

Transcript Sequence
>GWHTAAZE003460 ATGAATACATTTTCTCACGTTCCTCCAGGTTTTCGTTTCCATCCAACAGATGAAGAACTTGTTGACTACTATCTAAGGAAGAAGATTAACTGTAGAAGGATTGACCTAGATGTCATTAAAGATGTTGATCTTTACAAAATCGAGCCATGGGATCTTACAGAGTTGTGCAGACTAGGAACCGAAGATCAAAATGAATGGTACTTTTTCAGTCACAAAGATAAGAAGTATCCAACAGGAACGCGCACAAATAGAGCAACCGCAGCTGGATTCTGGAAAGCAACAGGGAGAGACAAGGCCATTTACTCTAAGCATGAGTTGGTTGGGATGAGGAAGACCTTAGTCTTTTATAAAGGTCGTGCCCCCAATGGACAAAAATCAGGATTGGATTATGCACGAGAAGAAGGTTGGGTTGTGTGTAGAGTGTTCAAGAAAAGAATAGCTACCACACAGAAAGTGAGCGAGCACGAGTCCCCAATGTGGTATGAGGAAAACGTGTCCTTCATGCCCGAAATGGACTCTCCAAAACAAAACTCCCAATCGACTATTATGACGACTCACCAATTTCACAACAATTCCTTTTGCAAGAAAGAGCTAGAAAATAATCTTAATCATCAATACCAAATTGCCCCTCACCATTTTCTCCAGCTACCCCTCCTCGAGAACCCAAAACTATTCTTTCAAACATCCAATTCTTCTATGCCTTTATATGGAAGCAATTTTCAGTCCTCGTCACTCACTCAAGAAGAACATAGTATTCAACAAAATCAAGATCAAAAGTTTCAGCCGATATTTCTGAGCAATAATTATGATGAGCAAGCAGTGGATCAAGTGACAGACTGGCGAGTACTCGACAAGTTTGTGGCCTCACAACTCAGCCATGAAGATGTTTCAAAAGAAAATGAATACTCTAATTCACCAAATGGAGTCTTTCACTCCGATGATCAGTTGAATGCAATAGTCAAACATTTGAGCAAGGACGATGCGGCATCAGAAATTGCCTCAACCTCGACCTCCACTTGTCAGATTGATCTATGGAAGTGA

Network for GWHGAAZE003454

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	8	137	8.00E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.095
	SRR3591706	second leaf	1.125
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.175
	SRR3591709	Stem	2.709
	SRR3591710	White floral bud	0.407
	SRR3591711	White flower	0.217
	SRR3591712	Green floral bud	0.536
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.445
	SRR8316896	Juvenile bud stage	0.496
	SRR8316897	Juvenile bud stage	0.246
	SRR8316894	Third green stage	0.147
	SRR8316900	Third green stage	0.528
	SRR8316901	Third green stage	0.655
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.275
	SRR8316903	Complete white stage	0.154
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.044
	SRR6706287	Light intensity 50%	0.117
	SRR6706288	Light intensity 20%	0.156
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.207
	CNS0095593	Slightly white alabastrum(diploid) 2	0.303
	CNS0095594	Slightly white alabastrum(diploid) 3	0.662
	CNS0095595	Whole white alabastrum(diploid) 2	0.050
	CNS0095596	Whole white alabastrum(diploid) 3	0.100
	CNS0095597	Whole white alabastrum(diploid) 4	0.289
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.027
	CNS0095603	Golden flower (diploid) 3	0.030
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.198
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.996
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.168
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.197
	CNS0095612	Silvery flower (tetraploid) 3	0.057
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.139
	CRR073298	Stem 2	0.277
	CRR073299	Stem 3	1.234
	CRR073300	Leaf 1	0.468
	CRR073301	Leaf 2	0.422
	CRR073302	Leaf 3	0.695
	CRR073303	Juvenile bud 1	0.125
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.165
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	4.321
	CRR073319	Tawny withering 2	2.322
	CRR073320	Tawny withering 3	6.957