Gene detail

Detail information of GWHGAAZE003435

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP22444.1	3.61877E-56	hypothetical protein JCGZ_26275 [Jatropha curcas]
trEMBL	tr\|A0A067JSB7\|A0A067JSB7_JATCU	1E-56	Uncharacterized protein {ECO:0000313\|EMBL:KDP22444.1}
TAIR10	AT5G09380.1	1E-25	RNA polymerase III RPC4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97769590	97771655	+
GWHAAZE00000001	mRNA	97769590	97771655	+
GWHAAZE00000001	exon	97769590	97769608	+
GWHAAZE00000001	exon	97769734	97769930	+
GWHAAZE00000001	exon	97770101	97770164	+
GWHAAZE00000001	exon	97770275	97770363	+
GWHAAZE00000001	exon	97770475	97770645	+
GWHAAZE00000001	exon	97771438	97771655	+
GWHAAZE00000001	CDS	97769590	97769608	+
GWHAAZE00000001	CDS	97769734	97769930	+
GWHAAZE00000001	CDS	97770101	97770164	+
GWHAAZE00000001	CDS	97770275	97770363	+
GWHAAZE00000001	CDS	97770475	97770645	+
GWHAAZE00000001	CDS	97771438	97771590	+
GWHAAZE00000001	three_prime_UTR	97771591	97771655	+

Transcript Sequence
>GWHTAAZE003441 ATGGTTAGCGTGCTAGAAGCTTCAGTGCAAGTTGCCTTTGCTCATGGAGCTGCGACATCAACTTCAATAAGGACATTTGGAAAACCTAGGGAAGGGAACGGTGGCGATAAAAGTAAAGACTTTGGTTCGACAGATTCCGCTGGTGACAATAGTAGGCAAATTGTTATTTCTTCTTCACCTTCAACTGCTACTACAGAAGGTACCAGCGGAAGTTCGGATTATGAAAATACATACTATCCCGTCACTCTCCCTTTGAGGAGGCCTTACTCTGGAGATCCTGAACTTTGTGATGCAGAAGAATTTGGTGAGGCTGGGGAAGACGTGTATAACGAAAATGCTATAAATGCTGCTGAGGAGCTTGGTCTGCTGGAGGAAAGTGAGGAACCACGGATGCTTTTTCTCCAGCTTCCTACTTGCGGCAATCGTGCAGATGGGAAAAACATGAGTGGTAGCCAAATACCATTGGGGGGACACATAGGCAAAATGTTGGTATACAAGAGCGGAACAGTCAAATGGAAGATAGGAGAAGCCCTATATGATGTTTCGGCGGGTTCCAATCCTAAATTTCCACAAGATGTAGTGGCCATCAACTCCGTCAATAAAGACTGCAGCATGCTTGGAGAACTTGGGCAGCGAGCTGTTGTAACACCTGAGATTGATTTCCTCTTGGATGGTGGAATAGACTTGAAGTAAGGCTACTACTAAGAAGCCATCTTGGGGAATTGCCAACGTTTAGATTTAGCGGCAGTGTACAATTT

Network for GWHGAAZE003435

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05132.15	RNA_pol_Rpc4	146	219	3.60E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03026	RPC4, POLR3D	RNA polymerase	map03020
K03026	RPC4, POLR3D	Cytosolic DNA-sensing pathway	map04623

Gene Ontology

GO term	Ontology	Name
GO:0006383	biological_process	transcription by RNA polymerase III
GO:0005666	cellular_component	RNA polymerase III complex
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.272
	SRR3591706	second leaf	4.662
	SRR3591707	mature leaf	4.510
	SRR3591708	Shoot apex	11.329
	SRR3591709	Stem	4.941
	SRR3591710	White floral bud	5.347
	SRR3591711	White flower	7.450
	SRR3591712	Green floral bud	2.976
	SRR3591713	Yellow flower	6.845
SRP173429	SRR8316895	Juvenile bud stage	3.865
	SRR8316896	Juvenile bud stage	3.836
	SRR8316897	Juvenile bud stage	2.150
	SRR8316894	Third green stage	1.309
	SRR8316900	Third green stage	2.445
	SRR8316901	Third green stage	1.580
	SRR8316898	Complete white stage	3.154
	SRR8316899	Complete white stage	4.342
	SRR8316903	Complete white stage	2.983
	SRR8316902	Silver flowering stage	6.463
	SRR8316904	Silver flowering stage	8.584
	SRR8316905	Silver flowering stage	4.020
	SRR8316906	Gold flowering stage	16.358
	SRR8316907	Gold flowering stage	12.425
	SRR8316908	Gold flowering stage	17.609
SRP132670	SRR6706286	Control	2.209
	SRR6706287	Light intensity 50%	1.838
	SRR6706288	Light intensity 20%	1.831
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.933
	CNS0095593	Slightly white alabastrum(diploid) 2	4.579
	CNS0095594	Slightly white alabastrum(diploid) 3	3.031
	CNS0095595	Whole white alabastrum(diploid) 2	2.539
	CNS0095596	Whole white alabastrum(diploid) 3	1.496
	CNS0095597	Whole white alabastrum(diploid) 4	2.647
	CNS0095598	Silvery flower (diploied) 1	5.244
	CNS0095599	Silvery flower (diploied) 2	3.696
	CNS0095600	Silvery flower (diploied) 3	7.377
	CNS0095601	Golden flower (diploid) 1	4.023
	CNS0095602	Golden flower (diploid) 2	5.373
	CNS0095603	Golden flower (diploid) 3	4.591
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.052
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.890
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.230
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.323
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.493
	CNS0095610	Silvery flower (tetraploid) 1	12.927
	CNS0095611	Silvery flower (tetraploid) 2	4.857
	CNS0095612	Silvery flower (tetraploid) 3	22.340
	CNS0095613	Golden flower (tetraploid) 1	21.607
	CNS0095614	Golden flower (tetraploid) 2	10.250
	CNS0095615	Golden flower (tetraploid) 3	14.339
CRA001975	CRR073297	Stem 1	5.550
	CRR073298	Stem 2	4.467
	CRR073299	Stem 3	4.920
	CRR073300	Leaf 1	2.576
	CRR073301	Leaf 2	4.046
	CRR073302	Leaf 3	1.719
	CRR073303	Juvenile bud 1	1.717
	CRR073304	Juvenile bud 2	1.100
	CRR073305	Juvenile bud 3	3.313
	CRR073306	Third green 1	3.902
	CRR073307	Third green 2	4.508
	CRR073308	Third green 3	4.093
	CRR073309	Second white 1	4.832
	CRR073310	Second white 2	7.721
	CRR073311	Second white 3	8.305
	CRR073312	Silver flowering 1	5.691
	CRR073313	Silver flowering 2	7.929
	CRR073314	Silver flowering 3	4.718
	CRR073315	Gold flowering 1	1.484
	CRR073316	Gold flowering 2	3.374
	CRR073317	Gold flowering 3	2.468
	CRR073318	Tawny withering 1	2.899
	CRR073319	Tawny withering 2	2.809
	CRR073320	Tawny withering 3	2.321