Gene detail

Detail information of GWHGAAZE003426

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP22458.1	0	hypothetical protein JCGZ_26289 [Jatropha curcas]
COG	YP_007834776.1	7E-22	Serine/threonine protein kinase
Swissprot	tr\|Q9FKG5\|PUB51_ARATH	0	Serine/threonine-protein kinase
trEMBL	tr\|A0A068UCJ8\|A0A068UCJ8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05368.1}
TAIR10	AT4G25160.1	1E-174	U-box domain-containing protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97655677	97659065	-
GWHAAZE00000001	mRNA	97655677	97659065	-
GWHAAZE00000001	exon	97655677	97655859	-
GWHAAZE00000001	exon	97656138	97656890	-
GWHAAZE00000001	exon	97657236	97657664	-
GWHAAZE00000001	exon	97657798	97657899	-
GWHAAZE00000001	exon	97657981	97658332	-
GWHAAZE00000001	exon	97658424	97658545	-
GWHAAZE00000001	exon	97658623	97658744	-
GWHAAZE00000001	exon	97658873	97659065	-
GWHAAZE00000001	CDS	97658873	97659065	-
GWHAAZE00000001	CDS	97658623	97658744	-
GWHAAZE00000001	CDS	97658424	97658545	-
GWHAAZE00000001	CDS	97657981	97658332	-
GWHAAZE00000001	CDS	97657798	97657899	-
GWHAAZE00000001	CDS	97657236	97657664	-
GWHAAZE00000001	CDS	97656138	97656890	-
GWHAAZE00000001	CDS	97655677	97655859	-

Transcript Sequence
>GWHTAAZE003432 ATGGGAGATAAAATAATTGAAGGCGAATTTGCATTGGGGCCACCATCACCTTCAGTTGTCGCAGTAGCAATCGATGGAGATATAAAAAGCAAACATGTTGTTAAGTGGGCATTAGATAAGTTTGCTCCCAAGCGAAAGGTTTTGTTTAAGTTGTTACATGTCCGCCCTACGATAACTAACGTTCCAACACCTATCGGACTTAACATTCAGATTTCACTAGTGCGAGAGGATGTAGCCAATGCTTTTAGAAAGGAAGTGGAATGGCGAACCAATCGAAATCTTCTTCCATTCATGAAGATGTGTGCTCAAAAAAAGGTTCAAGCAGAAATTGTACAAATCGAGTCAGATGATGTGGTAAATGCAATAGTGGGAGAGGTTGCTAGATCCAATATTAACGAACTTGTTATTGGAGCTTCATCCAGTATCACGTTTTTATGGGGACGGAATTTGTCCTCAAGAATCTCAGAACACGCTCCAAAGTTCTGTACTGTTTATGCTGTTTCGAAAGGAAAATTGTCATCAATGCGCCCATCCGATTCAGAGGCCAATGAGAACATCAAAGATGACCAAATTGACAAGAGTTATTCTGCAAAAAGCTCTTCAAGCAATGCATCTGTCTCACAAAAAGGAACCAATTCAACTGAAACTGATCATTTGAGAAATCAATCCGTGTATTTTGGGGAAGGAAAGGAAATTATAAATTATTTTTCTGGTAAATCAGATAATGTTACGTCTGATCACGCTTCTTCCCTTTCAGAGACTCCTACAGATCTTACATCTGAAAGACAGGCGAATATTGATTTTGAACTTGAAAAGCTGAGAATTGAACTCAAACATATTCAAGAAATGCAAGCAATTGCCCAAAGTGAAGCAACAAATGCTTCTGAGAAGCTAAAGGATCTTCACAAGTGCCATTTCGATGAAACAATGAAGCTCAAAGAAATAAAACTCAAGGAAGAGGCAGCTAAAGAACTAGCAAAGGAAGAGAAGGAGAAATACGAAGCTGCTAAAACAGAAACTGAGCAAATAAAGGAACGCGCTGATATAGAAGCTGCAAAGAGGAAAATGGCAGCTACTAAAGCCTCACGTGAGGCCAGAGAGAAGGAAAAGCTAGCGAAAGCGCTGGTGGGCCCTGCGCCACTCTATCAGAATTTTACTTGGGAAGAAATTGAGGCTGCTACCTCGTCGTTCTCTAAGGATCTTAGGATTGGAATGGGCTCGTATGGAACTGTATACAAGTGCAGTTTGCATCACACAACTGCTGCAGTAAAAGTCCTCCATTCTAAGGAGACTAACCGGACCAAGCAATTTCTGCAGGAGATTGAAATCTTGAGCAAAATTCGCCACCCACATTTGCTAATTCTTTTTGGAGCATGTCTGGATCGTGGTTGCCTTGTTTACGAGTACATGGAAAATGGGAGCTTGGAGGAGAGGTTGTTCCAAAAAAACAATACACCTCCAATCCCATGGTTTGACAGATTTAGAATAGCTTGGGAAGTAGCCTCGGCATTAGTCTTCCTTCACAATTCAAAACCAAAAGCAATCATCCATTGTGACCTAAAGCCAGCAAACATATTGCTTGACCACAATTTCATTAGCAAGATCGGTGATCTTGGCCTTTCAACAATGCTCCCATTGGACTCATCTTCAATATCCACTATTTACAAGGACACAGGTCCTGTTGGCACGCTTTGCTATATAGACCCTGAGTACCAAAGGAGCGGGTTGATATCTCCACAATCGGATGTTTATGCTTTTGGGATGGTTATTTTGCAGTTACTAACTGCAAAACCGGCCATAGCAATTGCCCATGTTGTCGAAAAAGCAATTGACAATTGTAACCTAATAAAAGTACTGGATCCAGATGCTGGGGAATGGCCAACTGAAGAGACCAGAGAATTGGCTGTGTTGGGAGTGAGCTGTGCAGAGCTTCGGCAAAGAGATAGGCCTAGTTTAAAAGACCATGTTCTCCCAATATTGGCGAGTTTAAAAGAGGTAGCTGATAGGGCTCGAGCCTTGGCACCCAAGGCTCAACCAGTGCCTCGTAGCCACTTCATTTGCCCCATACTCAAGGATGTAATGGACGATCCTTGTGTTGCCGAGGATGGGTACACTTACGAACGCAGGGCGATAGAGAGATGGTTTGAACACAATGACAAGTCGCCGATGACCAATTTACCGCTGACCAAAAAATGCCTAGTCCCAAATAATGCACTTCGTTCTGCAATTATGGAGTGGAAGTCGGGAAATAAATGA

Network for GWHGAAZE003426

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00582.27	Usp	20	163	2.90E-06
PF00069.26	Pkinase	399	654	6.80E-39
PF04564.16	U-box	684	750	7.10E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0006468	biological_process	protein phosphorylation
GO:0004842	molecular_function	ubiquitin-protein transferase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.516
	SRR3591706	second leaf	0.780
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.273
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.098
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.134
	SRR8316896	Juvenile bud stage	1.895
	SRR8316897	Juvenile bud stage	0.319
	SRR8316894	Third green stage	1.069
	SRR8316900	Third green stage	2.436
	SRR8316901	Third green stage	1.226
	SRR8316898	Complete white stage	0.177
	SRR8316899	Complete white stage	1.878
	SRR8316903	Complete white stage	0.127
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.002
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.816
	SRR6706287	Light intensity 50%	1.081
	SRR6706288	Light intensity 20%	0.956
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.264
	CNS0095593	Slightly white alabastrum(diploid) 2	1.523
	CNS0095594	Slightly white alabastrum(diploid) 3	1.379
	CNS0095595	Whole white alabastrum(diploid) 2	0.979
	CNS0095596	Whole white alabastrum(diploid) 3	1.118
	CNS0095597	Whole white alabastrum(diploid) 4	1.165
	CNS0095598	Silvery flower (diploied) 1	0.058
	CNS0095599	Silvery flower (diploied) 2	0.023
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.348
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.205
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.630
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.158
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.107
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.211
	CNS0095610	Silvery flower (tetraploid) 1	0.001
	CNS0095611	Silvery flower (tetraploid) 2	0.018
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.855
	CRR073298	Stem 2	1.439
	CRR073299	Stem 3	2.363
	CRR073300	Leaf 1	2.276
	CRR073301	Leaf 2	2.634
	CRR073302	Leaf 3	1.462
	CRR073303	Juvenile bud 1	1.237
	CRR073304	Juvenile bud 2	0.123
	CRR073305	Juvenile bud 3	0.654
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.024
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.007
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000