Gene detail

Detail information of GWHGAAZE003425

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009789263.1	3.128E-169	PREDICTED: putative kinase-like protein TMKL1 [Nicotiana sylvestris]
COG	NP_623114.1	2E-14	Serine/threonine protein kinase
Swissprot	tr\|C0LGP9\|IMK3_ARATH	5E-60	Probable leucine-rich repeat receptor-like protein kinase IMK3 (Precursor)
trEMBL	tr\|K4BIM3\|K4BIM3_SOLLC	4E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g093460.2.1}
TAIR10	AT5G07620.1	6E-110	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97653371	97655021	+
GWHAAZE00000001	mRNA	97653371	97655021	+
GWHAAZE00000001	exon	97653371	97653860	+
GWHAAZE00000001	exon	97654432	97655021	+
GWHAAZE00000001	CDS	97653371	97653860	+
GWHAAZE00000001	CDS	97654432	97655021	+

Transcript Sequence
>GWHTAAZE003431 ATGGAACGCAAACACATGCTCATTGCAATTCTAATATCAACCTCTTCTTGTATCACACTACTACTCCTCTGCATGATCTTTCTTTGCCGAAAAAGGCTGCCAAAAGATGTGTCCATAGATAGAGAAGCTCATTTGAACTCTAAAGAAAGAGATGAAATGGTTAAAACAGAGACTTTTATCAAGTTTAATGGGGGAGAAGATCTCACAGTGTTTGAGATATTGGATGCACCTGGCGAAGTTATTGGGAAATCTGGCTATGGGACTCTGTACAGAGCGGATTTACGGAGGACTGATTGTGTAATGTTGCTAAGGTTTTTTAGACCGGCGTATACCGAGACGATGAAAGAAGTGGTGCCGGTGATTGAACTGTTGGGGTCAATTAGGCACCCTAATCTGGTCCCACTGTGTGCATTTTATGGAGGGCCAAGGGGTGAGAAGCTTCTTGTTCATCCCTTTTATGGCCGTGGCACTTTGGCTCACTTCATTAGAGATGGAAATGGCGAGTCTCACAAATGGACCGTCATTTATAGGATTGCCAGTGGTATCGCCAAAGGACTAGATTATCTTCACACAGGACTTCTAAAGCCCTTAATCCATGGAAATCTCAAGTCAAAGAACATACTATTAGGTCGAAATTGTGAGCCCCACGTGTCCGATTTTGGCCTACACTTCCTCTTGAATCAACCAGCAGGGCTAGAGATGCTTGAAGATTCTGCAGCTGAGGGATACAAAGCTCCAGAGCTCGTCAAAATGAAGGATGCAAGTGAACAGACTGATATTTACAGCCTTGGAGTAATCTTGCTCGAATTAATTACTGGTAAGGAACCAATCAATGAGAAACCAACAAATGATCAAGACTTCTATTTGCCCAATTCTTTGACGAATGCAATTCTTGATCATCGAAGCTCGGATTTGTACCATCCAGATATTCTTATACAGGAAAATTCGGATCAAAACCCTGTTAATGAAGAAGTAATTCTCAAATTCCTTGAGCTTGCAATGGCTTGTTGTTCTCCCTCACCTACTCTTAGGCCTGATATAAAGCAGATCATCACTAAACTTGAAGAAATTGGAGATTAA

Network for GWHGAAZE003425

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	79	351	4.70E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.709
	SRR3591706	second leaf	1.401
	SRR3591707	mature leaf	1.000
	SRR3591708	Shoot apex	1.639
	SRR3591709	Stem	5.000
	SRR3591710	White floral bud	0.671
	SRR3591711	White flower	0.213
	SRR3591712	Green floral bud	3.142
	SRR3591713	Yellow flower	0.098
SRP173429	SRR8316895	Juvenile bud stage	1.040
	SRR8316896	Juvenile bud stage	0.936
	SRR8316897	Juvenile bud stage	0.436
	SRR8316894	Third green stage	0.579
	SRR8316900	Third green stage	1.652
	SRR8316901	Third green stage	1.697
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	3.317
	SRR8316903	Complete white stage	0.606
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.196
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.130
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.796
	SRR6706287	Light intensity 50%	1.224
	SRR6706288	Light intensity 20%	1.291
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.623
	CNS0095593	Slightly white alabastrum(diploid) 2	0.900
	CNS0095594	Slightly white alabastrum(diploid) 3	0.352
	CNS0095595	Whole white alabastrum(diploid) 2	0.976
	CNS0095596	Whole white alabastrum(diploid) 3	0.158
	CNS0095597	Whole white alabastrum(diploid) 4	0.695
	CNS0095598	Silvery flower (diploied) 1	0.782
	CNS0095599	Silvery flower (diploied) 2	0.324
	CNS0095600	Silvery flower (diploied) 3	0.373
	CNS0095601	Golden flower (diploid) 1	0.801
	CNS0095602	Golden flower (diploid) 2	0.274
	CNS0095603	Golden flower (diploid) 3	0.370
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.883
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.494
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.287
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.346
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.083
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.649
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.091
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.023
	CRR073298	Stem 2	1.104
	CRR073299	Stem 3	1.097
	CRR073300	Leaf 1	2.291
	CRR073301	Leaf 2	1.936
	CRR073302	Leaf 3	0.466
	CRR073303	Juvenile bud 1	0.953
	CRR073304	Juvenile bud 2	0.443
	CRR073305	Juvenile bud 3	0.720
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.439
	CRR073316	Gold flowering 2	0.484
	CRR073317	Gold flowering 3	0.539
	CRR073318	Tawny withering 1	1.254
	CRR073319	Tawny withering 2	1.170
	CRR073320	Tawny withering 3	4.242