Gene detail

Detail information of GWHGAAZE003399

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009760648.1	1.292E-161	PREDICTED: uncharacterized protein At1g28695-like [Nicotiana sylvestris]
Swissprot	tr\|Q3E6Y3\|Y1869_ARATH	1E-107	Uncharacterized protein At1g28695 (Precursor)
trEMBL	tr\|M1AF82\|M1AF82_SOLTU	4E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400021519}
TAIR10	AT1G28710.3	7E-92	Nucleotide-diphospho-sugar transferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97174983	97177984	+
GWHAAZE00000001	mRNA	97174983	97177984	+
GWHAAZE00000001	exon	97174983	97175108	+
GWHAAZE00000001	exon	97175188	97175565	+
GWHAAZE00000001	exon	97177481	97177984	+
GWHAAZE00000001	CDS	97174983	97175108	+
GWHAAZE00000001	CDS	97175188	97175565	+
GWHAAZE00000001	CDS	97177481	97177984	+

Transcript Sequence
>GWHTAAZE003405 ATGGATGAGCTGAAGAATCGAGCTGTTGATTTAACCATGATCACACTCTTATTTTCTGGCACGCTTTGTATTTTTATCATCATCAACCGTTCTAATATCAAGCCTGTGCAAAATGCTCCTCTAACATTTAATATGACAGTTTATAAAGATGAGCTAGATGAGGTTTTGGTGAAGGCTTCAACGGAGAACAAAACGGTAATAATAGCGGTAGTTAATAAAGCTTACGTAGAGGGTGATAAGTCGATGTTGGATCTGTTTTTGGACGGATTTTGGGTCGGGGATGATACCCGGGAACTAAAGGATCACCTGTTAATAGTAGCTGTGGATCAAACGTCCTTTGAACGGTGTAAGTTTCTGCATCTTCATTGCTACAAGATTCAAACCGAGGGTGTAGATTTTGTGGGGGAGAAAGTGTATATGTCTGAGGATTTTATAAAGATGATGTGGAGTAGAACTTTGTTTCTTGGTGATGTGCTTAAGCGTGGTTACAACTTCATCTTCACGGACACAGATGTAATTTGGCTAAGGAATCCATTTACAATGTTAAATCAAAGCGAATCCGTAGACCTCCAAATTAGTACAGATCAATTCCAGGGTGACCAATGGTCCGAATTAAACCCGATTAACACCGGCTTCTACATGATCAGATCCAACAACAAGACCATTGCGTTGTTCAATGAATGGTACTCAAAGAAAGACAACTCGACTGGAATGAAAGAACAAGATGTTCTGCTTATGCTAATGCGTAAGGGCTTATTTAGAAGTTTGGGACTTAGGGTTAAGTTTTTGGACACCCTTTACTTTAGTGGGTTTTGTCAAGACAGCAAAGATGTCAGAGTTGTCTCGACCGTGCATGCCAATTGTTGTCGTACTATTTGTGCCAAGATGTTTGATCTGATGGCGGTTGTTCACGATTGGACGAGGTTTAAGAGATCATCAAGCAATGAAACTACGATGTTTCAATGGACAAAACACACAGCCTGCATAAATTCATGGAAACATATATAA

Network for GWHGAAZE003399

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03407.17	Nucleotid_trans	101	299	2.40E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.562
	SRR3591711	White flower	0.854
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	6.814
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.066
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.079
	SRR8316902	Silver flowering stage	0.326
	SRR8316904	Silver flowering stage	0.275
	SRR8316905	Silver flowering stage	0.134
	SRR8316906	Gold flowering stage	1.709
	SRR8316907	Gold flowering stage	0.648
	SRR8316908	Gold flowering stage	2.245
SRP132670	SRR6706286	Control	0.026
	SRR6706287	Light intensity 50%	0.025
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.153
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.082
	CNS0095598	Silvery flower (diploied) 1	1.257
	CNS0095599	Silvery flower (diploied) 2	3.398
	CNS0095600	Silvery flower (diploied) 3	0.041
	CNS0095601	Golden flower (diploid) 1	0.397
	CNS0095602	Golden flower (diploid) 2	4.755
	CNS0095603	Golden flower (diploid) 3	3.386
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	2.182
	CNS0095611	Silvery flower (tetraploid) 2	1.056
	CNS0095612	Silvery flower (tetraploid) 3	3.578
	CNS0095613	Golden flower (tetraploid) 1	14.102
	CNS0095614	Golden flower (tetraploid) 2	10.014
	CNS0095615	Golden flower (tetraploid) 3	11.832
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.338
	CRR073307	Third green 2	3.889
	CRR073308	Third green 3	0.531
	CRR073309	Second white 1	0.414
	CRR073310	Second white 2	1.129
	CRR073311	Second white 3	0.728
	CRR073312	Silver flowering 1	3.824
	CRR073313	Silver flowering 2	6.284
	CRR073314	Silver flowering 3	11.565
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.082
	CRR073318	Tawny withering 1	8.457
	CRR073319	Tawny withering 2	3.927
	CRR073320	Tawny withering 3	9.067