Gene detail

Detail information of GWHGAAZE003383

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009607538.1	0	PREDICTED: probable inactive receptor kinase At5g58300 [Nicotiana tomentosiformis]
COG	YP_001958461.1	3E-15	hypothetical protein Aasi_1443
Swissprot	tr\|Q9LVM0\|Y5830_ARATH	0	Probable inactive receptor kinase At5g58300 (Precursor)
trEMBL	tr\|B9INK3\|B9INK3_POPTR	0	Putative plant disease resistance family protein {ECO:0000313\|EMBL:EEF00014.1}
TAIR10	AT5G58300.2	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96944554	96947602	-
GWHAAZE00000001	mRNA	96944554	96947602	-
GWHAAZE00000001	exon	96944554	96945182	-
GWHAAZE00000001	exon	96946417	96947602	-
GWHAAZE00000001	CDS	96946417	96947602	-
GWHAAZE00000001	CDS	96944554	96945182	-

Transcript Sequence
>GWHTAAZE003389 ATGAAGCTCAAGTTCTTAACTGTGATTACTTCACTCTTCTTCCTCCTACTGCTCTCTCTTCCATTAACTATCACTGATCCGAGCTCTGATAGAAATGCCCTTCTTGAATTTGCTGCTTCTGTTCCACATCTTAAAAAACTCAACTGGAACTCCTCTGTTTCACTCTGTACCTCATGGGTTGGCATCACCTGCGGTGAAAACAGAACAAGAAACAGAGTAATTGCCATTCATCTACCTGGTATTGGGCTCTATGGCACCATCCCACCCAACACTATTGGCAAATTGGATGCTCTTAGGGTTCTTAGTCTACACTCCAACGCCCTCTACGGTAATCTCTCTCCTGATATTCTCTCTCTTCCTTCTCTAAGAGCTCTCTACCTTCAACACAATAACCTTTCTGGTCATCTTCCTCTCTCAATATCTCCGCTTATTCGAGTAATTGACTTCTCCTTCAATTCTCTTTCTGGGTTTATCCCAGATATAAACCTCCCAAGGCTTAAGCTTTTGAATTTGAGCTACAACTTGTTCAATGGGTCAATTCCAATTTCCTTCAAGAACTTCCCAATCTCTTCATTCATGGGGAATCCTCTTTTATGTGGGTCACCTCTTACTGACTGCTCTTCAATGTCCTCCTCTTTTGAAAATCAAAATCCGTTGTCACACTCTAAGAAAATTAATGCTGGTTCTATCATTGGAATTGCAATAGGGGGCTGTTTGCCGGTGTTTCTTCTAGCTTTAGCTTTATTGTTCTGTTTCTTGAAGAAGAAACAGAGTGGTCGTATTGGCATAACGAAAAAGAAGGTCGCTAGCAGTGGGAAGAGAGCGAAGCCCGAGGACTTTGGGAGTGGGGTTCAAGAAGCAGAGAAGAACAAGTTGGTGTTTTTTGAAGGGAGCACTTTTAACTTTGATCTTGAGGATTTATTGAGGGCCTCAGCTGAAGTTCTTGGTAAAGGAGGATATGGAGCAGCCTATAAGGTTGTTTTGGATGAGGATACAACAGTGGTGGTGAAAAGATTGAAGGAAGTTGGGGTTGGGAAGAAGGAATTTGAACAGCATATGGAGGTTTTGGGGAGGGTTGGGAAGAACCCTAATGTTGTGCCACTACTTGCTTATTACTATTCCAAGGATGAGAAGCTTCTTGTTTATGAGTACATGCCTAATAGCAGCTTGTCTTCACTCTTGCATGGTAATAGAGAGATAGGGAGAACACTAGACTGGGAATCAAGAAAGAAGATTTCAATTGGAGCTGCTAAGGGAATTGCCCACATCCATTCCGAGGGTGGTGATAAATTCGCCCATGGCAACATCAAGTCCTCAAATGTCCTCCTCACTAGAGATCTTGATGGTTGCATATCAGACATTGGTTTAACTCCTTTAGTAAATTTTCCACTAAACAAATCTCGGGGCGCAGGCTATCGTGCACCCGAGGTGATCGAGACCATGAAATTCACCCAAAAATCTGATGTATACAGCTTCGGAGTGGTCCTTCTTGAGATGTTGACCGGTAAGACTCCAATCCAATTTACGAGGCGAGCTGAGGCCATTGATCTTCCTAGGTGGGTCCGATCAGTGGTGAGGGAAGAATGGACGGCCGAGGTTTTTGATGTGGAGTTGATGAGGTATGGAAATATTGAGGAAGAGATGGTGCAAGTGCTACAAATTGCACTTGCATGTGTGGCAAATGTGGCAAATATGAGGCCAACAATGGATGAAGTTGTTAATTTGATCGAGGAAGTTGGACAACCTACTACGTTGGATAATTGTCCTTCCTCGGAGGAAAGCAATTCCAAGAATTATAATGTGCAGACCCCATGA

Network for GWHGAAZE003383

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	64	3.40E-07
PF00069.26	Pkinase	312	574	2.40E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.001
	SRR3591706	second leaf	5.196
	SRR3591707	mature leaf	1.275
	SRR3591708	Shoot apex	12.292
	SRR3591709	Stem	19.517
	SRR3591710	White floral bud	14.922
	SRR3591711	White flower	9.282
	SRR3591712	Green floral bud	17.135
	SRR3591713	Yellow flower	2.607
SRP173429	SRR8316895	Juvenile bud stage	3.513
	SRR8316896	Juvenile bud stage	3.694
	SRR8316897	Juvenile bud stage	1.758
	SRR8316894	Third green stage	2.434
	SRR8316900	Third green stage	4.488
	SRR8316901	Third green stage	2.603
	SRR8316898	Complete white stage	1.411
	SRR8316899	Complete white stage	8.177
	SRR8316903	Complete white stage	3.545
	SRR8316902	Silver flowering stage	1.860
	SRR8316904	Silver flowering stage	3.177
	SRR8316905	Silver flowering stage	0.927
	SRR8316906	Gold flowering stage	0.983
	SRR8316907	Gold flowering stage	1.754
	SRR8316908	Gold flowering stage	2.677
SRP132670	SRR6706286	Control	3.881
	SRR6706287	Light intensity 50%	4.049
	SRR6706288	Light intensity 20%	3.569
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.113
	CNS0095593	Slightly white alabastrum(diploid) 2	2.890
	CNS0095594	Slightly white alabastrum(diploid) 3	2.220
	CNS0095595	Whole white alabastrum(diploid) 2	3.662
	CNS0095596	Whole white alabastrum(diploid) 3	3.275
	CNS0095597	Whole white alabastrum(diploid) 4	2.361
	CNS0095598	Silvery flower (diploied) 1	1.670
	CNS0095599	Silvery flower (diploied) 2	1.612
	CNS0095600	Silvery flower (diploied) 3	2.096
	CNS0095601	Golden flower (diploid) 1	1.395
	CNS0095602	Golden flower (diploid) 2	2.109
	CNS0095603	Golden flower (diploid) 3	1.231
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.883
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.014
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.885
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.317
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.440
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.753
	CNS0095610	Silvery flower (tetraploid) 1	6.594
	CNS0095611	Silvery flower (tetraploid) 2	6.218
	CNS0095612	Silvery flower (tetraploid) 3	9.174
	CNS0095613	Golden flower (tetraploid) 1	0.440
	CNS0095614	Golden flower (tetraploid) 2	5.745
	CNS0095615	Golden flower (tetraploid) 3	2.687
CRA001975	CRR073297	Stem 1	4.677
	CRR073298	Stem 2	3.935
	CRR073299	Stem 3	5.279
	CRR073300	Leaf 1	5.365
	CRR073301	Leaf 2	4.522
	CRR073302	Leaf 3	2.656
	CRR073303	Juvenile bud 1	9.153
	CRR073304	Juvenile bud 2	5.382
	CRR073305	Juvenile bud 3	14.743
	CRR073306	Third green 1	4.267
	CRR073307	Third green 2	5.093
	CRR073308	Third green 3	10.026
	CRR073309	Second white 1	1.383
	CRR073310	Second white 2	1.835
	CRR073311	Second white 3	0.720
	CRR073312	Silver flowering 1	0.033
	CRR073313	Silver flowering 2	0.374
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.654
	CRR073316	Gold flowering 2	1.008
	CRR073317	Gold flowering 3	0.919
	CRR073318	Tawny withering 1	9.238
	CRR073319	Tawny withering 2	4.442
	CRR073320	Tawny withering 3	11.672