Gene detail

Detail information of GWHGAAZE003358

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001267860.1	0	CBL-interacting protein kinase 13 [Vitis vinifera]
COG	YP_007468874.1	6E-35	serine/threonine protein kinase
Swissprot	tr\|Q7X996\|CIPK2_ORYSJ	0	CBL-interacting protein kinase 2
trEMBL	tr\|C4P7W2\|C4P7W2_VITVI	0	CBL-interacting protein kinase 13 {ECO:0000313\|EMBL:ACQ83529.1}
TAIR10	AT5G58380.1	3E-160	SOS3-interacting protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96511194	96512480	+
GWHAAZE00000001	mRNA	96511194	96512480	+
GWHAAZE00000001	exon	96511194	96512018	+
GWHAAZE00000001	exon	96512061	96512480	+
GWHAAZE00000001	CDS	96511194	96512018	+
GWHAAZE00000001	CDS	96512061	96512480	+

Transcript Sequence
>GWHTAAZE003364 ATGGAAAGGTATGATTTTGGAAAAAAACTAGGACAAGGAAACTTTGGTAAGGTTTTCTATGGGAGGAATCTCAAATCTGGTGAGAGCGTAGCCATTAAGGTAATTGACAAAGAGAAGATTTTGAAAGTCGGGTTGATTAATCAGACCAAACGAGAGATATCTGTTATGGGACTGGTTAAACACCCTAATGTAGTGCAGCTTTTCGAGGTAATGGCCACCAAGACCAAGATTTACTTTGTCATGGAGTTCGCCAAAGGCGGTGAGCTGTTTAACAAGGTGGCAAAGGGTAGGCTTAGGGAGGATATTGCAAGGAGTTATTTCCAACAGTTGATCTGTGCCGTTGATTTTTGCCACAGCAGAGGTGTGTATCATCGTGATTTGAAACCTGAGAACCTCCTACTAGATGAGAAAGGAATTCTAAAAGTTACAGATTTCGGCTTGAGTACGCTTGCTGAATGTAAAAATCACGACGGGTTACTACATACAACTTGCGGAACCCCAGCCTATGTTGCCCCTGAAGTGATATCCAGACGAGGGTATGATGGGGCCAAAGCTGACATTTGGTCTTGTGGGGTGATCTTGTTTGTTCTACTGGCGGGTTTTCTCCCCTTTCATGATACTAATCTTATGGAGATGTACAGGAAGATAAGCAAGGCTAAGTACAAATGCCCCAATTGGTTTCCAAATGAAGTACGCAGGTTGCTATCGAGGATCCTTGACCCAAACCCAAGCACTAGGATTTCCATGGCAGAAATCATGGAAAACCCCTGGTTCATGAAAAACCAAATGGAAAACAAGAAACTGACTCCACCACTAAGTTCTGATGCAAAGCCGGAGTTGGCTAAGCCTTCTAATTTGAATGCCTTCGATATCATCTCTCTGTCAACAGGGTTTGACTTGTCCGGTTTGTTTGTGGAAAATTTCCAAAAAGAGGAAGTACAATTTACATCCACAAAGCCTTCCTCGGCTATCATATCCAATCTAGAGGAGATTGCAGAACAACTGAATCTTGAAGTAATGAAGAAGGAAGAAGGGTTGTTCAAATTCAAGGGATCTAATGAAGGGCGGAATGGGCCATTGTCCATTGATGTGGAAATATTTGTGATTGCTCCGCTTTTTCATTTGGTGGTGTTGAAAAAGTGTAGCGGTGACACATTGGAGTATCAGAAACTACTGAAAGAGGAGATAAGACCAGCTCTTAAGGAAGTTGTTTGGGCTTGGCAAGGTGAGCAGCAGCCACAATAA

Network for GWHGAAZE003358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	4	258	2.10E-73
PF03822.15	NAF	283	341	1.10E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMKL-CHK1

KEGG pathway

KO	Enzyme	pathway	mapID
K07198	PRKAA, AMPK	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.459
	SRR3591706	second leaf	5.623
	SRR3591707	mature leaf	4.059
	SRR3591708	Shoot apex	5.658
	SRR3591709	Stem	26.218
	SRR3591710	White floral bud	54.056
	SRR3591711	White flower	6.474
	SRR3591712	Green floral bud	50.665
	SRR3591713	Yellow flower	6.631
SRP173429	SRR8316895	Juvenile bud stage	3.533
	SRR8316896	Juvenile bud stage	7.361
	SRR8316897	Juvenile bud stage	3.750
	SRR8316894	Third green stage	5.497
	SRR8316900	Third green stage	25.549
	SRR8316901	Third green stage	22.537
	SRR8316898	Complete white stage	3.539
	SRR8316899	Complete white stage	13.481
	SRR8316903	Complete white stage	6.734
	SRR8316902	Silver flowering stage	1.819
	SRR8316904	Silver flowering stage	4.831
	SRR8316905	Silver flowering stage	1.358
	SRR8316906	Gold flowering stage	3.859
	SRR8316907	Gold flowering stage	3.153
	SRR8316908	Gold flowering stage	3.943
SRP132670	SRR6706286	Control	13.228
	SRR6706287	Light intensity 50%	15.774
	SRR6706288	Light intensity 20%	17.217
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.477
	CNS0095593	Slightly white alabastrum(diploid) 2	24.131
	CNS0095594	Slightly white alabastrum(diploid) 3	18.930
	CNS0095595	Whole white alabastrum(diploid) 2	54.105
	CNS0095596	Whole white alabastrum(diploid) 3	60.010
	CNS0095597	Whole white alabastrum(diploid) 4	71.175
	CNS0095598	Silvery flower (diploied) 1	7.751
	CNS0095599	Silvery flower (diploied) 2	12.389
	CNS0095600	Silvery flower (diploied) 3	8.172
	CNS0095601	Golden flower (diploid) 1	6.697
	CNS0095602	Golden flower (diploid) 2	8.378
	CNS0095603	Golden flower (diploid) 3	7.623
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.098
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.081
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.578
	CNS0095607	Whole white alabastrum(tetraploid) 1	83.169
	CNS0095608	Whole white alabastrum(tetraploid) 2	99.842
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.253
	CNS0095610	Silvery flower (tetraploid) 1	7.947
	CNS0095611	Silvery flower (tetraploid) 2	11.708
	CNS0095612	Silvery flower (tetraploid) 3	17.752
	CNS0095613	Golden flower (tetraploid) 1	5.248
	CNS0095614	Golden flower (tetraploid) 2	9.240
	CNS0095615	Golden flower (tetraploid) 3	11.797
CRA001975	CRR073297	Stem 1	10.716
	CRR073298	Stem 2	13.809
	CRR073299	Stem 3	12.752
	CRR073300	Leaf 1	35.218
	CRR073301	Leaf 2	25.415
	CRR073302	Leaf 3	16.742
	CRR073303	Juvenile bud 1	35.640
	CRR073304	Juvenile bud 2	30.795
	CRR073305	Juvenile bud 3	23.577
	CRR073306	Third green 1	23.190
	CRR073307	Third green 2	27.263
	CRR073308	Third green 3	26.775
	CRR073309	Second white 1	3.234
	CRR073310	Second white 2	5.150
	CRR073311	Second white 3	3.797
	CRR073312	Silver flowering 1	8.937
	CRR073313	Silver flowering 2	11.937
	CRR073314	Silver flowering 3	5.432
	CRR073315	Gold flowering 1	9.540
	CRR073316	Gold flowering 2	3.804
	CRR073317	Gold flowering 3	7.262
	CRR073318	Tawny withering 1	29.915
	CRR073319	Tawny withering 2	25.556
	CRR073320	Tawny withering 3	41.792