Gene detail

Detail information of GWHGAAZE003337

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006435829.1	0	hypothetical protein CICLE_v10030707mg [Citrus clementina]
COG	YP_004775215.1	2E-49	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9SCT4\|IMK2_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 (Precursor)
trEMBL	tr\|V4VA04\|V4VA04_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR49069.1}
TAIR10	AT3G51740.1	0	inflorescence meristem receptor-like kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96212496	96215394	-
GWHAAZE00000001	mRNA	96212496	96215394	-
GWHAAZE00000001	exon	96212496	96213109	-
GWHAAZE00000001	exon	96213411	96215394	-
GWHAAZE00000001	CDS	96213411	96215394	-
GWHAAZE00000001	CDS	96212496	96213109	-

Transcript Sequence
>GWHTAAZE003343 ATGGAGCCTCAAATTCAATCTCCCAATAATCTTTACACCTACCCATTTCAAATTCTTGAGCTCTCAATCAGAAGAGTAGTAGCTCACTGTCATCAAATTTCCAACAAAAAGAAGGAAAAATGGAAGATTCATTCCAATCCTTTTCCTCCTTCTTCGTATAAGTTTCTCCACCGTGCCCATTTTGTGATCTTTCTTCAGCTATTGAGTTGCCTCATTCACCCAGCTTCAAGCCAGAGCTGGGATGGTGTAATTGTAACCCAAGCAGATTACCAAGCACTCCAAGCCTTCAAACACGACCTAATCGACCCCAGAGGCTTCTTAAGAAGCTGGAACGATAGCGGCTATGGAGCCTGCTCCGGTGGTTGGGTCGGAATAAAGTGCGCGCAAGGACAAGTTATTGTCATACAGCTTCCATGGAAGGGATTAGGTGGCCGAATAACTGAAAAGATTGGCCAGTTTCAAGCAATACGAAAACTCAGCCTCCATGATAATGCCATTGGGGGTTCAATTCCAATGGCATTAGGATTTCTCCCCAATCTCAGAGGAGTTCAACTATTCAACAATTGGCTTTCGGGTTCAATTCCTCCTTCACTTGGCTCTTGTCCTTTGCTTCAAACACTTGATCTTAGTAATAATTCGCTCACCGGCACTATTCCGGATTCTCTTGCTAACTCTACCAAGCTTTTTAGACTTAATCTTAGCTTCAATTCGTTGACCGGTTCAATCCCATTTAGTCTCACTCAATCTTCTTCCCTTATTTTCTTTGCATTACAGTACAATAATCTCTCTGGGTCTATACCAGATTCTTGGGGTGGTTCAGGTAGAGATAGGTTTCAATCTTTAACACTTGATCATAACAACTTCTCTGGAAGTATTCCTCCTTCTTTGAGCAAGTTGAGTGAACTTGAAGAAGTTTCATTGAGCCATAACCAAATTAGTGGAACATTACCAAGTGATTTGGGCAGGCTCTCTAAGCTTAGAACACTAGATTTTTCATTCAATGACATCAATGGAAGCTTACCCATTACTCTCTCCAATCTATCCTCACTTGTTTCTTTGAATATAGAGAGCAACAGCATTGATAACATAATCCCAGAAGATATAGACAAATTAAAAAACCTATCAGTTCTCAACCTGAAGAGTAACAAGTTCACCGGCCTAATTCCAGCCACTATCGGCAACATTTCCACTCTCACACAACTTGATTTATCTCATAACAACCTCTCCAGTGAAATTCCGGTCTCTCTCGATAACCTAGCCAATCTTAGTTCTTTCAATGTTTCATATAACAATCTCTCTGGTCCTGTACCCAATAGCCTCCTTCAAAAGTTCACTTCAAGTGCCTTTGTGGGCAATCTTCAGCTCTGTGGGTACAGTGGTTCAAACCCGTGTCCGGTATCGCCTTCTCCGGTCACCCCATCTTCATCACCAACATCAAAAGGCCATGGTAGAAAACTAAGTACCAAAGATATTATTCTCATAGCAGCTGGTGTTCTCCTCGTAGTGTTACTTTTGCTCTGCTTTGTCTTGCTGTGTTGCTTGATTAGGAGAAGGGCTGCATCAAAAGCAAAGGATGGTGGGGCCGTAGTGGGACCCAGTGGGACCCGTGCTGGAAAGGGTGTACCTCCAACCGTCAGTGAAGTCGAAGCCGGTGGAGAGGCGGGAGGAAAGCTTGTCCATTTCGATGGTCCTATGGCTTTTACGGCCGATGATCTTTTATGTGCCACAGCTGAAATTATGGGGAAGAGTACTTATGGGACTGTTTATAAGGCCACACTGGAAGATGGTAGTCAAGTTGCGGTAAAAAGATTGAGAGAGAAGATTACCAAGAATCAGAGAGAATTCGAAACAGAGGCTAATGTTATTGGGAAAATTCGACATGCAAATCTTTTGGCTATGAGGGCTTATTACTTGGGTCCTAAAGGAGAGAAGCTTCTTGTTTTCGATTACATTTCCAGAGGAAGTCTAGCTTCTTTCCTCCACGCTCGAGGACCGGACACGCCAATTGATTGGCCAATGAGGATGAAAATCGTTAAAGGGATGACCCAGGGCTTGTTTTATCTTCACACTAATGAGAACATAATCCATGGGAATTTGACCTCGAGCAATGTTCTTCTTGATGAGAACGCAAATGCAAAGATAGCCGATTTTGGACTGTCGAGGCTAATGACGGCTGCAGCTAATTCTAACGTGATTGCAACTGCTGGTGCACTGGGCTATCGTGCACCTGAACTGTCGAAGCTGAAGAAAGCCAACACAAAGACGGATGTGTACAGCCTCGGTGTTATCATGTTGGAACTTCTAACTGGGAAGTCACCGGGCGAGGCAATGAACGGTGCAGATTTGCCCAATTGGGTTGCTTCGATAGTGAAGGAGGAGTGGACTAACGAGGTGTTTGATTTGGAACTAATGAAGGATGCATCAGCAGTTGGTGATGAGTTGTTGAACACTTTGAAATTGGCATTGCATTGTGTGGATCCATCACCGTCGGCTCGGCCTGAAGTTCATCAGGTTCTGCAGCAATTGGAAGAGATTAGACCGGTAAACTCCACCAGTTCCGGTGATGATGGCGGTGCAGTCCCTTCAACCAGTGATTGA

Network for GWHGAAZE003337

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	88	127	1.20E-08
PF00560.34	LRR_1	204	223	0.077
PF13855.7	LRR_8	279	336	5.50E-07
PF13855.7	LRR_8	373	432	8.50E-09
PF07714.18	PK_Tyr_Ser-Thr	578	842	2.90E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.569
	SRR3591706	second leaf	9.746
	SRR3591707	mature leaf	0.345
	SRR3591708	Shoot apex	27.184
	SRR3591709	Stem	1.793
	SRR3591710	White floral bud	0.399
	SRR3591711	White flower	0.151
	SRR3591712	Green floral bud	1.046
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.452
	SRR8316896	Juvenile bud stage	2.191
	SRR8316897	Juvenile bud stage	1.382
	SRR8316894	Third green stage	1.060
	SRR8316900	Third green stage	1.738
	SRR8316901	Third green stage	1.264
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.409
	SRR8316903	Complete white stage	0.107
	SRR8316902	Silver flowering stage	0.017
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.039
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.028
SRP132670	SRR6706286	Control	1.062
	SRR6706287	Light intensity 50%	1.123
	SRR6706288	Light intensity 20%	1.693
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.777
	CNS0095593	Slightly white alabastrum(diploid) 2	2.465
	CNS0095594	Slightly white alabastrum(diploid) 3	1.770
	CNS0095595	Whole white alabastrum(diploid) 2	1.331
	CNS0095596	Whole white alabastrum(diploid) 3	0.875
	CNS0095597	Whole white alabastrum(diploid) 4	0.582
	CNS0095598	Silvery flower (diploied) 1	2.042
	CNS0095599	Silvery flower (diploied) 2	0.966
	CNS0095600	Silvery flower (diploied) 3	0.223
	CNS0095601	Golden flower (diploid) 1	0.819
	CNS0095602	Golden flower (diploid) 2	0.470
	CNS0095603	Golden flower (diploid) 3	0.539
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.681
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.246
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.136
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.523
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.039
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.486
	CNS0095610	Silvery flower (tetraploid) 1	0.021
	CNS0095611	Silvery flower (tetraploid) 2	0.110
	CNS0095612	Silvery flower (tetraploid) 3	0.193
	CNS0095613	Golden flower (tetraploid) 1	0.013
	CNS0095614	Golden flower (tetraploid) 2	0.022
	CNS0095615	Golden flower (tetraploid) 3	0.027
CRA001975	CRR073297	Stem 1	6.201
	CRR073298	Stem 2	6.610
	CRR073299	Stem 3	8.086
	CRR073300	Leaf 1	2.018
	CRR073301	Leaf 2	1.930
	CRR073302	Leaf 3	1.106
	CRR073303	Juvenile bud 1	1.054
	CRR073304	Juvenile bud 2	0.150
	CRR073305	Juvenile bud 3	1.096
	CRR073306	Third green 1	0.264
	CRR073307	Third green 2	0.123
	CRR073308	Third green 3	0.272
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.105
	CRR073311	Second white 3	0.011
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.540
	CRR073316	Gold flowering 2	0.313
	CRR073317	Gold flowering 3	0.687
	CRR073318	Tawny withering 1	3.425
	CRR073319	Tawny withering 2	3.624
	CRR073320	Tawny withering 3	2.599