Gene detail

Detail information of GWHGAAZE003334

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009594370.1	0	PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Nicotiana tomentosiformis]
COG	YP_270079.1	2E-24	Snf2 family protein
Swissprot	tr\|F4K493\|CLSY2_ARATH	0	SNF2 domain-containing protein CLASSY 2
trEMBL	tr\|M1C7N3\|M1C7N3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400061539}
TAIR10	AT5G20420.1	0	chromatin remodeling 42

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96161527	96165770	-
GWHAAZE00000001	mRNA	96161527	96165770	-
GWHAAZE00000001	exon	96161527	96163464	-
GWHAAZE00000001	exon	96163608	96163754	-
GWHAAZE00000001	exon	96163916	96165361	-
GWHAAZE00000001	exon	96165465	96165770	-
GWHAAZE00000001	CDS	96165465	96165770	-
GWHAAZE00000001	CDS	96163916	96165361	-
GWHAAZE00000001	CDS	96163608	96163754	-
GWHAAZE00000001	CDS	96161527	96163464	-

Transcript Sequence
>GWHTAAZE003340 ATGACAGCTTTTGAAGCATATTGGTGCGGTTCATGGCAAACCGTGGAGCGCTTGAGAATCAGCGATGGGACTATATTTATGAATGTCATAGATAATAAAGATCAGGTAATTGAGGAGACCAATATTTCCATCTCAAATCTTCGAATAAGGTCAAGGAAAGCAACCTTGTCTGATTGCACTTGCTTCCTGAGACCTGGACTTGATATTTGTGTGCTTTCAACCCCTCATCACACACAAGATTCTGATGATGATGAAAACCCAGAGCCAGTTCATACAGAAAGTTTGGCTGAGGAAAACTTCGAGCCAGTCTGGATTGATGCTAAAATAAGTTCTATTGAGAGAAAGCCTCATGAAGATAAATGTGGTTGCCAGTTTTACATTAATGTCTTTACTAAACAAGGCCCGGCTGGTATGAAGAAGAAAGCACTTAGTAAAGTGACCACCATAGTCCAACTCGATCAAATTTTCATCCTTCAGAGGCTTGAAAAAAATCCTTGTGAGAGTAAGCACTATCGTTGGAGTTTCTCTGAGGATTGCATTTCTCGTAACATGCCTAAACTATTTACGGGAAAATTCTCGTCTGATCTTACATGGCTACTTGTTGCATCTGTTTTTAAGCAACTTGTATTTGATGTAAGGACAATACAGAACCAAATTGTTTATCAGATATGGGATGGTGACGAGGACCCACCAAAATCCAATAATCATACGAATGCTGTGAATTTCAAGTTGGATGATGGGATTGCGGTCCCCATTCTTGTACCTTTTGCTCTAGATGATACTGAGGAGAAGGGGCTGGATTGCAACACGAATGATGTGGGACCACTTTCTTGTTATGATCTACTGGGTTTGAGACGCTCAAAGCGTCGATATGTGCAGCCGGATCGCTATGTGGGTTGTTTTGATTTACCAGAGCAGGATGTTGACATATGTCGAGTAGGAATATACAAGACATGGAAAGAAGAATATGAAGAACTTCCTTTGGCACTATCGATCCAAGATGATCATGCATTTAAGGTAGAGAAGCGTGCTGAAGATGGCAAAAGGGACAACTCTTGTAGAAAAGAATCGAAAGATGTATATAAGAGTTTTCTCTTCCATCAGAGAAAGATCAAATACAAGGAGGTAAAATCAAAATCAGTTGTACCTGCTAATGGAATGGATCGAGGAGAAAATCAATCTCAACTTGCTATTGTTCCTCTACCTGATGAAACAGGGATGTTATTCCGTGACGAGGATCCTCTCGATGTTGTGGTTCCTGAAGATCATTCACGAGATATTATTGAAGTGATTTCTGAGTATAGACACCTAAACAGTTTCGCTCAAGTGCAGAGAGTAAATGGTTTTCCTCGAGCCACCAGAAACAAAAACTACGAGGAAAACTTATTGGTACCAAAAGGTGGATGGGAGTGGACAGGTTTGCATAAGAAAGCACGAAGGAGGGATTATTGTATTCATTCAAAACGAGAGAGTATATATGATGCAAGAACTTCAGTAAGGAGATCCTACAGTGCGAGCGTGTATAGGGAAATGATACGACGATGCATGGAAAACATAGATGATGTACTCAATAAAGAAGAGCCACCGATTATCTATCAGTGGAAAGAGTTTCGGGCATCAAATTTCTTGGATGAGAGGGATCCCGAAGAGATGCCCACAAAGGACAATGAAGAAGAAAGCTCAGATACTGAAATTTTGTGGAAGGAAATGGAATTTTCCATGCAATCTATGTATGTTCTTGAAGACAGTGAGGTTGAAGTTCCATTTGAAGTCCAAAAACCAAATAAAGATGCTGGACAAGTTTGTCGACATGACTACCGGCTCAACGAAGAGATCGGAATCTTTTGCCGGATATGTGGCTTTGTGAGCACTGAAATAAAAGATGTTACACCACCCTTTTTACCATCCACAAGTTTGATCACAAGCAAGGAAACCCGACCTCAAGATAATTCAGAGCAAAAGCTTGAGGAAGACGGTGGCCTTGATCTTTTCTGCATCCCTGCTGTGTCAAACGTACCATTATCAGAAGGGAACGACAATGTGTGGGCCTTAATACCCGATCTTAAAGAAAAACTGCGTTTCCACCAAAAAAGAGCATTTGAATTTCTATGGCGAAACATTGCTGGTTGTTTGGAACCAGCACTTATGGAATCGGCACGAAAAGAACGAGGCGGTTGTGTTATCTCTCATTCTCCCGGAGCCGGCAAAACTCTGCTTATAATTGCATTCCTTGTGAGCTACTTGAAGTTATTCCCGGGCTCGAGGCCCTTGGTCCTTGCTCCAAAGACAACCCTCTATACCTGGTACAAAGAAATCATCAAGTGGGATATCCCTATCCCCGTTTACCAAATCCATGGTGGTCAAACATACAAAGGTGAAGTCTCTAAGCAGAAAGTGAAATTAGGTCCAGGTGTATACCGCGATCAAAATGTTATGCATGTTTTGGACTGCCTAGAGAAAATACAGAAGTGGCTTTCTCATCCTAGTGTCCTTCTAATGGGCTATACTTCATTCGTAATATTAACTCGAGAAGATTCGAAACATGCTCACAGGCAATACATGTGCAAAGTGTTGCGCCAATGTCCAGGGATTTTGATACTTGATGAGGGGCACAACCCGAGGAGCACCAAGTCGAGGTTAAGAAAGGGCTTAATGAAAATCAATACGGGTTTGAGAATTTTGCTTTCGGGTACTCTGTTTCAGAACAATTTTGGTGAGTATTTCAATACCCTTTGCTTAGCAAGGCCGAGTTTTGTTACAGAGGTGTTGACTGCACTCGACCCCAAGTTCAAGAAGGGAAAGAAAGGTGCAAAATCAAAATTTTCACTTGAAAACCGAGCAAGGAAACTCTTCATCCAAAAAGTTGGTGATAGGATTGATTTGAGTGTACCCAAGGAAAGATTGGAGGCTCTAAATATATTGAAGAATCTAACGGGCGGATTTATAGATGTTTATGAAGGAGGAGGCTCTGAGAGCCTTCCCGGTTTACAATGTTACACTTGTATGATGAAGTCAACCACTATCCAACAAGAGATTCTTTCGAAACTTCAGAACCTAAGGCCTCATTACAAAGGATTCCCACTAGAGTTGGAGCTTTTAATCACCCTTGGATCAATACATCCTTGTTTGATCAAAACAACATCATGCGCATCTCAATATTTTGATGTGGACGAGTTGCATAGTCTCGAGAAAACCAAATCAGAGCTGAAACTAGGCTCGAAAGTGAGATTCGTAATGAGCTTAGTGCCCAAGTGTCTACTTAGAAATGAGAAGGTACTAATCTTTTGCCACAACATAGCTCCCATTAACCTATTCATCAACATATTCGAGAGGATGTACACATGGCGGAAGGGCAAAGAAGTATTGGTCCTTCAAGGAGACGTTGAGCTCTTTGAACGAGGGAGAATTATGGATAAGTTTGAAGACCCGCGCGGAAAATCAAAGGTAATGTTGGCTTCGATTAATGCTTGTGCCGAAGGCATTAGTTTGACTGCAGCATCACGCGTCATCTTATTGGATTCAGAGTGGAACCCTTCTAAAAGCAAGCAAGCTATTGCTCGAGCTTTTAGACCCGGGCAAGATAAAGTTGTGTACGTATATCAGCTTTTGGCGAATGGGACACTTGAAGAGGAGAAATACAAAAGAACGACGTGGAAAGAATGGGTCTCGAATTTGATATTCAGCGAAGAACACGTTGAGGATCCTTGTCGTTGGGAAGCGCCAAAGATTGAAGATGAGTTGCTGAGGGAGATAGTAGAGGAGGATAGAGGTGCATTGTTTCATATGATAATGAAGAATGAAAAGGCTTCAAATGGATTAATGAGATGTAAAGAGTAG

Network for GWHGAAZE003334

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	697	964	1.40E-16
PF00271.32	Helicase_C	1076	1191	9.80E-14

Protein Sequence

>GWHPAAZE003337
MTAFEAYWCGSWQTVERLRISDGTIFMNVIDNKDQVIEETNISISNLRIRSRKATLSDCTCFLRPGLDICVLSTPHHTQDSDDDENPEPVHTESLAEENFEPVWIDAKISSIERKPHEDKCGCQFYINVFTKQGPAGMKKKALSKVTTIVQLDQIFILQRLEKNPCESKHYRWSFSEDCISRNMPKLFTGKFSSDLTWLLVASVFKQLVFDVRTIQNQIVYQIWDGDEDPPKSNNHTNAVNFKLDDGIAVPILVPFALDDTEEKGLDCNTNDVGPLSCYDLLGLRRSKRRYVQPDRYVGCFDLPEQDVDICRVGIYKTWKEEYEELPLALSIQDDHAFKVEKRAEDGKRDNSCRKESKDVYKSFLFHQRKIKYKEVKSKSVVPANGMDRGENQSQLAIVPLPDETGMLFRDEDPLDVVVPEDHSRDIIEVISEYRHLNSFAQVQRVNGFPRATRNKNYEENLLVPKGGWEWTGLHKKARRRDYCIHSKRESIYDARTSVRRSYSASVYREMIRRCMENIDDVLNKEEPPIIYQWKEFRASNFLDERDPEEMPTKDNEEESSDTEILWKEMEFSMQSMYVLEDSEVEVPFEVQKPNKDAGQVCRHDYRLNEEIGIFCRICGFVSTEIKDVTPPFLPSTSLITSKETRPQDNSEQKLEEDGGLDLFCIPAVSNVPLSEGNDNVWALIPDLKEKLRFHQKRAFEFLWRNIAGCLEPALMESARKERGGCVISHSPGAGKTLLIIAFLVSYLKLFPGSRPLVLAPKTTLYTWYKEIIKWDIPIPVYQIHGGQTYKGEVSKQKVKLGPGVYRDQNVMHVLDCLEKIQKWLSHPSVLLMGYTSFVILTREDSKHAHRQYMCKVLRQCPGILILDEGHNPRSTKSRLRKGLMKINTGLRILLSGTLFQNNFGEYFNTLCLARPSFVTEVLTALDPKFKKGKKGAKSKFSLENRARKLFIQKVGDRIDLSVPKERLEALNILKNLTGGFIDVYEGGGSESLPGLQCYTCMMKSTTIQQEILSKLQNLRPHYKGFPLELELLITLGSIHPCLIKTTSCASQYFDVDELHSLEKTKSELKLGSKVRFVMSLVPKCLLRNEKVLIFCHNIAPINLFINIFERMYTWRKGKEVLVLQGDVELFERGRIMDKFEDPRGKSKVMLASINACAEGISLTAASRVILLDSEWNPSKSKQAIARAFRPGQDKVVYVYQLLANGTLEEEKYKRTTWKEWVSNLIFSEEHVEDPCRWEAPKIEDELLREIVEEDRGALFHMIMKNEKASNGLMRCKE

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K10875	RAD54L, RAD54	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.102
	SRR3591706	second leaf	0.527
	SRR3591707	mature leaf	0.246
	SRR3591708	Shoot apex	1.107
	SRR3591709	Stem	1.575
	SRR3591710	White floral bud	0.818
	SRR3591711	White flower	0.831
	SRR3591712	Green floral bud	0.176
	SRR3591713	Yellow flower	0.078
SRP173429	SRR8316895	Juvenile bud stage	0.919
	SRR8316896	Juvenile bud stage	0.514
	SRR8316897	Juvenile bud stage	0.884
	SRR8316894	Third green stage	0.120
	SRR8316900	Third green stage	0.091
	SRR8316901	Third green stage	0.300
	SRR8316898	Complete white stage	0.256
	SRR8316899	Complete white stage	1.430
	SRR8316903	Complete white stage	0.601
	SRR8316902	Silver flowering stage	0.010
	SRR8316904	Silver flowering stage	0.087
	SRR8316905	Silver flowering stage	0.048
	SRR8316906	Gold flowering stage	0.053
	SRR8316907	Gold flowering stage	0.062
	SRR8316908	Gold flowering stage	0.174
SRP132670	SRR6706286	Control	0.345
	SRR6706287	Light intensity 50%	0.309
	SRR6706288	Light intensity 20%	0.265
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.519
	CNS0095593	Slightly white alabastrum(diploid) 2	0.799
	CNS0095594	Slightly white alabastrum(diploid) 3	0.718
	CNS0095595	Whole white alabastrum(diploid) 2	0.781
	CNS0095596	Whole white alabastrum(diploid) 3	0.167
	CNS0095597	Whole white alabastrum(diploid) 4	0.767
	CNS0095598	Silvery flower (diploied) 1	0.789
	CNS0095599	Silvery flower (diploied) 2	2.275
	CNS0095600	Silvery flower (diploied) 3	0.627
	CNS0095601	Golden flower (diploid) 1	1.249
	CNS0095602	Golden flower (diploid) 2	1.246
	CNS0095603	Golden flower (diploid) 3	1.092
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.147
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.031
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.178
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.838
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.362
	CNS0095610	Silvery flower (tetraploid) 1	0.668
	CNS0095611	Silvery flower (tetraploid) 2	0.666
	CNS0095612	Silvery flower (tetraploid) 3	0.633
	CNS0095613	Golden flower (tetraploid) 1	0.183
	CNS0095614	Golden flower (tetraploid) 2	0.508
	CNS0095615	Golden flower (tetraploid) 3	0.105
CRA001975	CRR073297	Stem 1	0.798
	CRR073298	Stem 2	0.428
	CRR073299	Stem 3	0.591
	CRR073300	Leaf 1	0.315
	CRR073301	Leaf 2	0.258
	CRR073302	Leaf 3	0.193
	CRR073303	Juvenile bud 1	0.227
	CRR073304	Juvenile bud 2	0.130
	CRR073305	Juvenile bud 3	0.311
	CRR073306	Third green 1	0.056
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.020
	CRR073309	Second white 1	0.048
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.024
	CRR073316	Gold flowering 2	0.040
	CRR073317	Gold flowering 3	0.011
	CRR073318	Tawny withering 1	0.906
	CRR073319	Tawny withering 2	2.622
	CRR073320	Tawny withering 3	0.957