Detail information of GWHGAAZE003330


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010658222.10PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X2 [Vitis vinifera]
COGYP_004771296.13E-28endo-beta-N-acetylglucosaminidase
trEMBLtr|F6HCA6|F6HCA6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB49830.1}
TAIR10AT5G05460.10Glycosyl hydrolase family 85

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9611037596116541-
GWHAAZE00000001mRNA9611037596116541-
GWHAAZE00000001exon9611037596111133-
GWHAAZE00000001exon9611148896111623-
GWHAAZE00000001exon9611203796112092-
GWHAAZE00000001exon9611239496112474-
GWHAAZE00000001exon9611277696112857-
GWHAAZE00000001exon9611323796113349-
GWHAAZE00000001exon9611419796114304-
GWHAAZE00000001exon9611438796114498-
GWHAAZE00000001exon9611461096114719-
GWHAAZE00000001exon9611510096115268-
GWHAAZE00000001exon9611535796115456-
GWHAAZE00000001exon9611618496116541-
GWHAAZE00000001CDS9611618496116541-
GWHAAZE00000001CDS9611535796115456-
GWHAAZE00000001CDS9611510096115268-
GWHAAZE00000001CDS9611461096114719-
GWHAAZE00000001CDS9611438796114498-
GWHAAZE00000001CDS9611419796114304-
GWHAAZE00000001CDS9611323796113349-
GWHAAZE00000001CDS9611277696112857-
GWHAAZE00000001CDS9611239496112474-
GWHAAZE00000001CDS9611203796112092-
GWHAAZE00000001CDS9611148896111623-
GWHAAZE00000001CDS9611037596111133-
Transcript Sequence

Network for GWHGAAZE003330

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0276GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity GOslim:molecular_function
map00511 Other glycan degradation
GO:0016311 dephosphorylation GOslim:biological_process
GO:0006470 protein dephosphorylation GOslim:biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity GOslim:molecular_function
GO:0004725 protein tyrosine phosphatase activity GOslim:molecular_function
GO:0016791 phosphatase activity GOslim:molecular_function
GO:0005737 cytoplasm GOslim:cellular_component


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03644.14Glyco_hydro_85631151.80E-16
PF03644.14Glyco_hydro_851623899.70E-70
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01227ENGASE Other glycan degradation map00511

Gene Ontology

GO term OntologyName
GO:0005737cellular_componentcytoplasm
GO:0033925molecular_functionmannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.883
SRR3591706second leaf6.288
SRR3591707mature leaf10.387
SRR3591708Shoot apex8.061
SRR3591709Stem15.270
SRR3591710White floral bud7.827
SRR3591711White flower8.939
SRR3591712Green floral bud10.090
SRR3591713Yellow flower5.806
SRP173429 SRR8316895Juvenile bud stage 5.695
SRR8316896Juvenile bud stage 8.011
SRR8316897Juvenile bud stage 3.586
SRR8316894Third green stage 3.421
SRR8316900Third green stage 7.869
SRR8316901Third green stage 7.514
SRR8316898Complete white stage 2.264
SRR8316899Complete white stage 12.477
SRR8316903Complete white stage 3.593
SRR8316902Silver flowering stage1.675
SRR8316904Silver flowering stage1.788
SRR8316905Silver flowering stage0.689
SRR8316906Gold flowering stage 2.672
SRR8316907Gold flowering stage 2.402
SRR8316908Gold flowering stage 2.544
SRP132670SRR6706286Control5.773
SRR6706287Light intensity 50%6.326
SRR6706288Light intensity 20%6.364
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.042
CNS0095593Slightly white alabastrum(diploid) 24.426
CNS0095594Slightly white alabastrum(diploid) 35.323
CNS0095595Whole white alabastrum(diploid) 24.214
CNS0095596Whole white alabastrum(diploid) 34.027
CNS0095597Whole white alabastrum(diploid) 44.800
CNS0095598Silvery flower (diploied) 17.434
CNS0095599Silvery flower (diploied) 23.797
CNS0095600Silvery flower (diploied) 34.753
CNS0095601Golden flower (diploid) 15.916
CNS0095602Golden flower (diploid) 24.892
CNS0095603Golden flower (diploid) 36.003
CNS0095604Slightly white alabastrum(tetraploid) 15.133
CNS0095605Slightly white alabastrum(tetraploid) 23.967
CNS0095606Slightly white alabastrum(tetraploid) 313.273
CNS0095607Whole white alabastrum(tetraploid) 12.574
CNS0095608Whole white alabastrum(tetraploid) 23.422
CNS0095609Whole white alabastrum(tetraploid) 38.766
CNS0095610Silvery flower (tetraploid) 17.775
CNS0095611Silvery flower (tetraploid) 25.658
CNS0095612Silvery flower (tetraploid) 34.357
CNS0095613Golden flower (tetraploid) 13.550
CNS0095614Golden flower (tetraploid) 26.079
CNS0095615Golden flower (tetraploid) 31.299
CRA001975CRR073297Stem 14.318
CRR073298Stem 24.214
CRR073299Stem 32.504
CRR073300Leaf 16.720
CRR073301Leaf 24.638
CRR073302Leaf 33.216
CRR073303Juvenile bud 13.032
CRR073304Juvenile bud 22.061
CRR073305Juvenile bud 33.150
CRR073306Third green 10.862
CRR073307Third green 20.322
CRR073308Third green 30.514
CRR073309Second white 10.578
CRR073310Second white 20.695
CRR073311Second white 30.947
CRR073312Silver flowering 10.351
CRR073313Silver flowering 20.578
CRR073314Silver flowering 30.326
CRR073315Gold flowering 11.298
CRR073316Gold flowering 22.139
CRR073317Gold flowering 30.235
CRR073318Tawny withering 13.498
CRR073319Tawny withering 23.658
CRR073320Tawny withering 32.309