Gene detail

Detail information of GWHGAAZE003328

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010322166.1	1.5563E-142	PREDICTED: ferritin-1, chloroplastic [Solanum lycopersicum]
COG	YP_002465080.1	9E-20	ferroxidase
Swissprot	tr\|Q8H1T3\|FRI2_TOBAC	2E-143	Ferritin-2, chloroplastic (Precursor)
trEMBL	tr\|K4C5P1\|K4C5P1_SOLLC	6E-143	Ferritin {ECO:0000256\|RuleBase:RU361145}
TAIR10	AT2G40300.1	4E-91	ferritin 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96075659	96078940	-
GWHAAZE00000001	mRNA	96075659	96078940	-
GWHAAZE00000001	exon	96078630	96078940	-
GWHAAZE00000001	exon	96078022	96078105	-
GWHAAZE00000001	exon	96077850	96077910	-
GWHAAZE00000001	exon	96077671	96077758	-
GWHAAZE00000001	exon	96077048	96077109	-
GWHAAZE00000001	exon	96076621	96076686	-
GWHAAZE00000001	exon	96076431	96076494	-
GWHAAZE00000001	exon	96075659	96076050	-
GWHAAZE00000001	CDS	96078630	96078940	-
GWHAAZE00000001	CDS	96078022	96078105	-
GWHAAZE00000001	CDS	96077850	96077910	-
GWHAAZE00000001	CDS	96077671	96077758	-
GWHAAZE00000001	CDS	96077048	96077109	-
GWHAAZE00000001	CDS	96076621	96076686	-
GWHAAZE00000001	CDS	96076431	96076494	-
GWHAAZE00000001	CDS	96076001	96076050	-
GWHAAZE00000001	three_prime_UTR	96075659	96076000	-

Transcript Sequence
>GWHTAAZE003334 ATGCTTCTCAAAGCCTCCTCTTCTGTGTCTCTATTCAATAATAACGGGGAAAATCTGAGCCACTCGTTGAATTCTGGGGGCTTTTCTGTTTCCTTTGTTTTGAGGTACTCGCCGGTGAAAGATGGAAATGGTTTTTCTTTTTCCGTTTGTGCGGCAAAGCAATCGAACAATCGGCCTCTTACGGGTGTTTTATTCGAGCCCTTCGAAGAGGTGAAGAAGGAGCTGATGCTCGTTCCCTCTGTTCCTCAAGATTCTCTTGCACGACAGAAATATTCCAATGAATCTGAAGCCGCCATCAATGAACAGATCAACGTTGAATACAATGTTTCATACATATACCACGCAATTTATGCCTACTTTGATCGGGACAATGTGGCTCTCAAGGGTTTAGCCAAGTTTTTCAAGGAGTCGAGTGAAGAGGAAAGAGGCCATGCCGAAAAATTCATGGAGTATCAGAACAAACGAGGTGGGAAGGTGAAGCTGCAATCTATTCTAATGCCGTTATCTGAGTTTGACCATGTCGAAAAGGGAGACGCGTTGTATGCAATGGAGCTTGCTTTGTCATTGGAGAAGTTAACAAATGAAAAACTACTTAACTTGCATAAGGTAGCCAGCCGTAACAATGATGTGCAGTTGGCTGATTTTGTTGAGAGCGAGTTTTTGGGTGAACAGGTGGAAGCAATTAAAAGGATATCTGAATATGTTGCTCAGCTAAGAAGAGTGGGCAAAGGACATGGAGTATGGCATTTTGATCAGATGCTTCTAGAGGAGGGAGTAATTGCATGATGATGTAGGATTGTTATGTTTTCTTCTATGTACCACATGGCAGTATGTTCTCTCGGTTATTTTTGTGCTTTTCAAATTTGTCTTAAGAGATTGTTGGTGTGTTTTGTTGCTGAAACTTTTTGTGAAGGTTTGTAGATGAGAGGACTGGTTCTAGTTTAAGCGTAGTTGCAGATTCAGTTTCTTGATGCCTTTGAGAGTTCCTTAGCAGAACAGAATTATATCTTTTATATATTGCCTGGTAGTTGTCGTTCATTGTGGAAGAGTATATTCTTCTCTGTTTTTTTTCTTCGTAATTCATCATTATTAGTTGCGACTTGCAACCAATACATTAATTTCATATCA

Network for GWHGAAZE003328

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00210.25	Ferritin	97	241	8.50E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00522	FTH1	Ferroptosis	map04216
		Necroptosis	map04217
		Mineral absorption	map04978

Gene Ontology

GO term	Ontology	Name
GO:0006879	biological_process	cellular iron ion homeostasis
GO:0008199	molecular_function	ferric iron binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.897
	SRR3591706	second leaf	24.562
	SRR3591707	mature leaf	37.396
	SRR3591708	Shoot apex	24.889
	SRR3591709	Stem	26.899
	SRR3591710	White floral bud	58.300
	SRR3591711	White flower	73.759
	SRR3591712	Green floral bud	82.241
	SRR3591713	Yellow flower	55.054
SRP173429	SRR8316895	Juvenile bud stage	37.214
	SRR8316896	Juvenile bud stage	65.082
	SRR8316897	Juvenile bud stage	27.668
	SRR8316894	Third green stage	21.945
	SRR8316900	Third green stage	71.118
	SRR8316901	Third green stage	67.802
	SRR8316898	Complete white stage	17.290
	SRR8316899	Complete white stage	101.685
	SRR8316903	Complete white stage	25.538
	SRR8316902	Silver flowering stage	21.078
	SRR8316904	Silver flowering stage	23.490
	SRR8316905	Silver flowering stage	12.240
	SRR8316906	Gold flowering stage	32.997
	SRR8316907	Gold flowering stage	26.635
	SRR8316908	Gold flowering stage	33.150
SRP132670	SRR6706286	Control	27.522
	SRR6706287	Light intensity 50%	35.224
	SRR6706288	Light intensity 20%	42.436
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	54.591
	CNS0095593	Slightly white alabastrum(diploid) 2	36.602
	CNS0095594	Slightly white alabastrum(diploid) 3	68.132
	CNS0095595	Whole white alabastrum(diploid) 2	46.256
	CNS0095596	Whole white alabastrum(diploid) 3	52.917
	CNS0095597	Whole white alabastrum(diploid) 4	36.292
	CNS0095598	Silvery flower (diploied) 1	52.231
	CNS0095599	Silvery flower (diploied) 2	59.056
	CNS0095600	Silvery flower (diploied) 3	79.160
	CNS0095601	Golden flower (diploid) 1	33.692
	CNS0095602	Golden flower (diploid) 2	53.223
	CNS0095603	Golden flower (diploid) 3	49.630
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.490
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.885
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.660
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	45.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	65.321
	CNS0095610	Silvery flower (tetraploid) 1	86.775
	CNS0095611	Silvery flower (tetraploid) 2	108.433
	CNS0095612	Silvery flower (tetraploid) 3	77.879
	CNS0095613	Golden flower (tetraploid) 1	42.012
	CNS0095614	Golden flower (tetraploid) 2	77.564
	CNS0095615	Golden flower (tetraploid) 3	15.601
CRA001975	CRR073297	Stem 1	38.163
	CRR073298	Stem 2	39.210
	CRR073299	Stem 3	45.127
	CRR073300	Leaf 1	40.503
	CRR073301	Leaf 2	41.337
	CRR073302	Leaf 3	47.517
	CRR073303	Juvenile bud 1	48.011
	CRR073304	Juvenile bud 2	28.779
	CRR073305	Juvenile bud 3	37.052
	CRR073306	Third green 1	0.747
	CRR073307	Third green 2	1.869
	CRR073308	Third green 3	2.205
	CRR073309	Second white 1	12.313
	CRR073310	Second white 2	8.835
	CRR073311	Second white 3	3.976
	CRR073312	Silver flowering 1	2.944
	CRR073313	Silver flowering 2	5.936
	CRR073314	Silver flowering 3	4.807
	CRR073315	Gold flowering 1	41.923
	CRR073316	Gold flowering 2	46.369
	CRR073317	Gold flowering 3	31.757
	CRR073318	Tawny withering 1	41.854
	CRR073319	Tawny withering 2	44.088
	CRR073320	Tawny withering 3	39.170