Detail information of GWHGAAZE003310


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007008919.18.02266E-20Basic helix-loop-helix DNA-binding superfamily protein, putative [Theobroma cacao]
Swissprottr|Q9XEF0|BH051_ARATH2E-10Transcription factor bHLH51
trEMBLtr|A0A061FT34|A0A061FT34_THECC3E-20Basic helix-loop-helix DNA-binding superfamily protein, putative {ECO:0000313|EMBL:EOY17729.1}
TAIR10AT2G40200.10.000000004basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9584368895844111+
GWHAAZE00000001mRNA9584368895844111+
GWHAAZE00000001exon9584368895843963+
GWHAAZE00000001exon9584406795844111+
GWHAAZE00000001CDS9584368895843963+
GWHAAZE00000001CDS9584406795844111+
Transcript Sequence

Network for GWHGAAZE003310

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH631019.60E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.575
SRR3591706second leaf0.797
SRR3591707mature leaf0.387
SRR3591708Shoot apex5.735
SRR3591709Stem25.897
SRR3591710White floral bud6.576
SRR3591711White flower10.685
SRR3591712Green floral bud1.593
SRR3591713Yellow flower2.767
SRP173429 SRR8316895Juvenile bud stage 1.597
SRR8316896Juvenile bud stage 2.311
SRR8316897Juvenile bud stage 1.577
SRR8316894Third green stage 1.907
SRR8316900Third green stage 3.155
SRR8316901Third green stage 1.344
SRR8316898Complete white stage 1.045
SRR8316899Complete white stage 4.287
SRR8316903Complete white stage 1.615
SRR8316902Silver flowering stage2.679
SRR8316904Silver flowering stage2.016
SRR8316905Silver flowering stage1.105
SRR8316906Gold flowering stage 3.068
SRR8316907Gold flowering stage 4.412
SRR8316908Gold flowering stage 9.749
SRP132670SRR6706286Control11.248
SRR6706287Light intensity 50%7.066
SRR6706288Light intensity 20%7.664
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.030
CNS0095593Slightly white alabastrum(diploid) 22.378
CNS0095594Slightly white alabastrum(diploid) 33.398
CNS0095595Whole white alabastrum(diploid) 22.476
CNS0095596Whole white alabastrum(diploid) 32.665
CNS0095597Whole white alabastrum(diploid) 41.978
CNS0095598Silvery flower (diploied) 125.965
CNS0095599Silvery flower (diploied) 217.760
CNS0095600Silvery flower (diploied) 35.244
CNS0095601Golden flower (diploid) 113.063
CNS0095602Golden flower (diploid) 214.124
CNS0095603Golden flower (diploid) 313.256
CNS0095604Slightly white alabastrum(tetraploid) 10.804
CNS0095605Slightly white alabastrum(tetraploid) 21.156
CNS0095606Slightly white alabastrum(tetraploid) 32.922
CNS0095607Whole white alabastrum(tetraploid) 10.221
CNS0095608Whole white alabastrum(tetraploid) 20.912
CNS0095609Whole white alabastrum(tetraploid) 32.455
CNS0095610Silvery flower (tetraploid) 110.436
CNS0095611Silvery flower (tetraploid) 26.629
CNS0095612Silvery flower (tetraploid) 31.705
CNS0095613Golden flower (tetraploid) 12.241
CNS0095614Golden flower (tetraploid) 25.360
CNS0095615Golden flower (tetraploid) 32.941
CRA001975CRR073297Stem 16.110
CRR073298Stem 24.891
CRR073299Stem 38.199
CRR073300Leaf 11.733
CRR073301Leaf 22.755
CRR073302Leaf 30.513
CRR073303Juvenile bud 10.844
CRR073304Juvenile bud 20.910
CRR073305Juvenile bud 32.918
CRR073306Third green 10.000
CRR073307Third green 20.161
CRR073308Third green 31.808
CRR073309Second white 10.033
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.060
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 113.109
CRR073316Gold flowering 212.794
CRR073317Gold flowering 36.572
CRR073318Tawny withering 127.375
CRR073319Tawny withering 28.237
CRR073320Tawny withering 313.523