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Detail information of GWHGAAZE003309
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
CDP13994.1
0
unnamed protein product [Coffea canephora]
Swissprot
tr|Q0WNJ6|CLAH1_ARATH
0
Clathrin heavy chain 1
trEMBL
tr|A0A068V0E9|A0A068V0E9_COFCA
0
Clathrin heavy chain {ECO:0000256|PIRNR:PIRNR002290}
TAIR10
AT3G11130.1
0
Clathrin, heavy chain
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000001
gene
95825353
95838685
+
GWHAAZE00000001
mRNA
95825353
95838685
+
GWHAAZE00000001
exon
95825353
95825397
+
GWHAAZE00000001
exon
95825764
95825968
+
GWHAAZE00000001
exon
95826633
95826721
+
GWHAAZE00000001
exon
95826842
95826920
+
GWHAAZE00000001
exon
95827050
95827177
+
GWHAAZE00000001
exon
95827472
95827570
+
GWHAAZE00000001
exon
95827669
95827777
+
GWHAAZE00000001
exon
95828452
95828531
+
GWHAAZE00000001
exon
95828605
95828832
+
GWHAAZE00000001
exon
95828918
95828983
+
GWHAAZE00000001
exon
95829509
95829625
+
GWHAAZE00000001
exon
95831316
95831513
+
GWHAAZE00000001
exon
95831632
95831748
+
GWHAAZE00000001
exon
95831823
95831882
+
GWHAAZE00000001
exon
95832039
95832125
+
GWHAAZE00000001
exon
95832307
95832390
+
GWHAAZE00000001
exon
95832474
95832608
+
GWHAAZE00000001
exon
95832691
95832753
+
GWHAAZE00000001
exon
95832829
95832933
+
GWHAAZE00000001
exon
95833042
95833154
+
GWHAAZE00000001
exon
95833266
95833518
+
GWHAAZE00000001
exon
95833608
95833744
+
GWHAAZE00000001
exon
95833823
95834101
+
GWHAAZE00000001
exon
95834191
95835193
+
GWHAAZE00000001
exon
95835333
95835818
+
GWHAAZE00000001
exon
95835909
95836079
+
GWHAAZE00000001
exon
95836170
95836355
+
GWHAAZE00000001
exon
95837774
95837896
+
GWHAAZE00000001
exon
95838265
95838375
+
GWHAAZE00000001
exon
95838530
95838685
+
GWHAAZE00000001
CDS
95825353
95825397
+
GWHAAZE00000001
CDS
95825764
95825968
+
GWHAAZE00000001
CDS
95826633
95826721
+
GWHAAZE00000001
CDS
95826842
95826920
+
GWHAAZE00000001
CDS
95827050
95827177
+
GWHAAZE00000001
CDS
95827472
95827570
+
GWHAAZE00000001
CDS
95827669
95827777
+
GWHAAZE00000001
CDS
95828452
95828531
+
GWHAAZE00000001
CDS
95828605
95828832
+
GWHAAZE00000001
CDS
95828918
95828983
+
GWHAAZE00000001
CDS
95829509
95829625
+
GWHAAZE00000001
CDS
95831316
95831513
+
GWHAAZE00000001
CDS
95831632
95831748
+
GWHAAZE00000001
CDS
95831823
95831882
+
GWHAAZE00000001
CDS
95832039
95832125
+
GWHAAZE00000001
CDS
95832307
95832390
+
GWHAAZE00000001
CDS
95832474
95832608
+
GWHAAZE00000001
CDS
95832691
95832753
+
GWHAAZE00000001
CDS
95832829
95832933
+
GWHAAZE00000001
CDS
95833042
95833154
+
GWHAAZE00000001
CDS
95833266
95833518
+
GWHAAZE00000001
CDS
95833608
95833744
+
GWHAAZE00000001
CDS
95833823
95834101
+
GWHAAZE00000001
CDS
95834191
95835193
+
GWHAAZE00000001
CDS
95835333
95835818
+
GWHAAZE00000001
CDS
95835909
95836079
+
GWHAAZE00000001
CDS
95836170
95836355
+
GWHAAZE00000001
CDS
95837774
95837896
+
GWHAAZE00000001
CDS
95838265
95838375
+
GWHAAZE00000001
CDS
95838530
95838685
+
Transcript Sequence
>GWHTAAZE003315 ATGGCGGCCGCCAACGCTCCTATCACCATGAAAGAATCCCTAACGTTGCCTAGCATAGGGATCAATCCCCAATTTATCACCTTTACGAATGTTACAATGGAATCCGACAAGTATATATGTGTTCGTGAGACGGCTCCACAGAACAGTGTGGTAATTATTGACATGAGCATGCCAATGCAGCCATTGAGGAGGCCTATTACAGCAGACTCTGCTCTTATGAATCCCAATTCCAGAATTCTTGCTCTAAAAGCTCAACTTCCGGGAACTACTCAGGATCACTTACAAATATTTAACATTGAACTGAAAGCAAAAATCAAGTCACATCAGATGCCCGAGCAGGTTGTCTTTTGGAAGTGGATTACAACAAAGTTGTTAGGCTTGGTCACACAAACTTCAGTGTATCATTGGTCGATTGAAGGTGATTCTGAACCTGTCAAGATGTTTGATAGAACAGCTAATTTGGCAAACAATCAGATAATTAATTATCGATGTGATCCTTCGGAAAAATGGTTGGTTTTGATTGGTATTGCTCCTGGTTCACCGGAGAGGCCACAACTTGTCAAGGGAAACATGCAACTTTTTTCTGTGGATCAGCAGCGCAGTCAAGCTCTTGAAGCACATGCCGCATCTTTTGCCTCTTTCAAAGTTCCCGGGAATGAGAATCCTTCAATTATAATTTCTTTTGCAACAAAAAGCTCCAATGCAGGACAGATTACCTCAAAGTTGCATATTATTGAGCTTGGTGCTCAGCCAGGGAAACCATCCTTTACGAAGAAGCAAGCAGATCTGTTCTTTCCTCCTGATTTCGCGGATGACTTTCCAGTTGCCATGCAGATATCACATAAATATAGTTTAATTTTTGTGATCACGAAGCTTGGACTTCTATTCGTGTATGACCTCGAAACTGCAACCGCAGTCTACAGAAATAGGATTAGTCCGGATCCAATTTTTTTGACAGCGGAAGCTTTGTCTGTGGGGGGGTTCTATGCCATCAATAGGCGTGGCCAGGTGTTACTTGCGACTGTTAATGAAGCAACAATAGTTCCTTTTGTCAGTGGCCAATTGAATAACCTGGAGCTTGCTGTCAATCTTGCCAAAAGAGGAAACTTACCTGGTGCAGAGAATTTGGTCTTGCAGCGCTTCCAAGAGTTGTTTGCACAAACCAAGTACAAAGAAGCTGCTGAGCTTGCTGCAGAATCTCCTCAAGGCATCCTCCGTACGCCTGATACAGTTGCCAAATTTCAGAGTGTTCCAGTGCAATCTGGACAAACGCCCCCTTTGTTGCAGTACTTTGGAACACTTTTAACCAGAGGAAAGCTTAATGCATTTGAGTCGTTGGAATTATCTCGCCTTGTTGTGAACCAGAACAAGAAGAACCTTCTGGAGAATTGGTTGGCTGAGGACAAGCTGGAATGCAGTGAGGAACTTGGGGACCTTGTAAAGACTGTGGACAATGATCTTGCTCTGAAAATATATATTAAAGCAAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGCGGAGGGAGTTTGACAAAATTCTGATATACTCAAAGCAGGTCGGATATACACCTGATTACATGTTCCTTCTGCAAACAATTCTTCGATCAGATCCTCAGGGAGCTGTTAACTTTGCCCTCATGATGTCCCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACAATAACGGACCTCTTTCTTCAGAGGAACTTGATACGTGAGGCAACTGCATTTTTACTGGATGTTCTGAAGCCCAATTTGCCGGAACACGCTTTTCTGCAAACTAAGGTTCTGGAAATCAATCTTGTAACCTTTCCTAATGTTGCTGATGCTATCTTAGCAAATGGAATGTTCAGTCATTATGACCGTCCTCGAATTGCTCAACTTTGTGAAAAAGCTGGTCTGTTTGTGCGAGCTCTTCAGCATTACAGCGAACTGCCAGACATCAAACGTGTCATTGTGAATACTCATGCAATTGAACCACAGTCTCTTGTAGAGTTCTTTGGAACTCTTTCACGAGAATGGGCTCTGGAGTGCATGAAGGACCTTTTACTGGTCAATCTAAGAGGCAACCTTCAGATAATCGTGCAGGTTGCCAAGGAGTATTCTGAGCAGTTAGGTGTTGATCAATGCATTAAACTATTTGAGCAATTTAAGTCATATGAAGGGTTATACTTCTTCTTGGGGTCGTATTTAAGTTCCAGTGAGGATCCCGATATTCATTTTAAGTACATTGAGGCAGCTGCCAAAACAGGCCAAATCAAGGAAGTTGAGCGTGTGACAAGAGAATCAAATTTCTATGATGCTGAAAAGGCAAAGAACTTTTTAATGGAAGCCAAGCTTCCAGATGCACGACCACTGATTAATGTGTGTGACCGGTTTGGTTTTGTTCCAGACCTAACGCACTACCTATATACAAACAACATGCTCCGATATATTGAAGGTTACGTGCAAAAGGTGAACCCGGGAAATGCTCCATTAGTTGTCGGGCAGCTTCTGGATGATGAGTGCCCTGAAGATTTTATCAAAGGCCTGATTCTATCGGTCCGCTCTCTTCTTCCTGTTGAGCCCCTTGTGGAGGAGTGTGAGAAAAGGAACCGGCTTCGGTTACTCACTCAATTTTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGACGTACATGTTCACAATGCTCTTGGTAAAATCATAATAGACAGCAACAACAATCCAGAGCATTTCCTGACCACCAACCCGTATTATGATTCCCGAGTTGTGGGTAAATATTGTGAAAAGAGAGATCCAACCCTTGCTGTTGTTGCTTACCGCAGAGGGCAATGCGATGATGAACTTATTAATGTTACAAATAGGAACTCTTTATTCAAGCTGCAAGCCAGGTATGTTGTTGAGAGGATGGATGGTGATCTCTGGGAGAAAGTTCTTAACCCTGAGAATGAATATAGAAGACAGCTCATTGATCAAGTTGTATCTACTGCTTTGCCTGAAAGCAAGAGCCCGGAACAAGTTTCAGCAGCTGTTAAGGCTTTTATGACCGCTGATCTTCCTCATGAATTAATTGAGCTTCTTGAAAAGATTGTGCTACAGAACTCCGCATTCAGTGGAAACTTTAACCTGCAAAACTTGCTTATCTTGACTGCCATCAAGGCAGATCCTTCTAGAGTCATGGACTACGTCAATAGACTGGATAACTTTGATGGACCCGCAGTGGGGGAAGTGGCTGTGGAAGCCCAATTGTATGAAGAAGCTTTTGCAATTTTCAAGAAGTTCAACCTGAATGTCCAGGCTGTCAATGTTTTATTGGATAATATTCAAAGCATCCCTCGTGCAGTGGAGTTTGCATTCCGTGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGGTAAAGCTCAACTGAGGGAGGGATTAGTGAGTGATGCTATTGAGTCATTTATTCGTGCTGATGATGCCACACAATTCTTGGATGTTATTCGCGCGGCTGAGGATGGAGATGTTTACCATGACTTGGTGAGATACCTTCTGATGGTTAGACAGAAGGCTAAGGAGCCCAAGGTAGACAGTGAACTCATTTACGCGTACGCAAAGATTGATAGGCTGGGAGACATTGAAGAATTTATTCTCATGCCAAATGTTGCTAATCTTCATAGCGTTGGTGATCGCTTGTACGATGAAGCTCTCTATGAGGCTGCAAAGATAATATATGCTTTTATTTCTAACTGGGCCAAGTTGGCGGTCACACTCGTGAAGCTAAAACAGTTTCAAGGTGCCGTTGATGCAGCGAGGAAAGCGAATAGCTCAAAGACATGGAAAGAAGTCTGCTTCGCTTGTGTTGATGCGGAGGAGTTCCGATTGGCTCAGATATGTGGGCTTAACATTATTGTACAGGTGGATGACCTGGAAGAGGTCAGTGAATATTACCAAAACAGAGGATGTTTCAATGAACTAATATCTCTTATGGAGAGTGGTTTAGGATTGGAACGGGCACATATGGGAATCTTCACTGAGTTGGGAGTCCTTTATGCTAGATACCGTCATGAGAAGCTTATGGAGCACGTCAAGCTGTTTTCAACTCGTCTCAACATTCCCAAGCTAATCCGAGCATGCGATGAGCAACAACATTGGATGGAACTCACTTATTTATATATCCAGTATGATGAATTTGATAATGCTGCTATCACTGTTATGAATCACTCCCCAGAAGCTTGGGATCACATGCAATTCAAAGATATTGCTGTTAAAGTGTCTAATGTGGAGCTCTATTATAAGGCTGTGCACTTCTATTTGAAAGAGCATCCTGATCTTATCAATGATCTTCTCAATGTTCTTGCGCTTCGCGTGGACCACACGCGCGTGGTTGACATAATGCGGAAGGCAGGTCACCTGCTTCTTGTGAAGCCATACATGGTTGCAGTGCAAAGTAACAATGTGTCTGCGGTAAATGAGGCGTTGAATGAGATCTATGTGGAGGAGGAAGACTATGATAGACTGAGAGAATCAATTGATTTGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGATTGAGAAACATGAACTTCTTGAGATGAGGCGTGTAGCTGCGTACATTTACAAGAAAGCAGGCAGATGGAAGCAATCCATTGCATTGTCTAAGAAAGACAATCATTACAAAGATGCAATGGAAACAGCTTCGCAGTCAGGTGATCGTGAACTTGCCGAGGAGTTGCTTGTTTATTTCATTGAGCAGGGAAAGAAGGAATGCTTTGCGTCGTGCCTCTTTGTTTGCTATGATTTGATTCGGCCGGATGTTGCTCTTGAACTTGCCTGGATGAACAATATGACCGACTTCGCCTTTCCATATTTGTTGCAGTTTATCCGCGAGTACACAGGCAAAGTTGATGAACTAATCAAGGATAAAATAGAAGCTGTCAATGAAATGAAGGCCAAGGAGAACGAGGAGAAAGATGTAATTAAACAACAGAATATGTATGCTCAATTGCTGCCTCTTGCTCTACCTGCACCACCAATGCCTGGTATGGGAGGATCGGGGATGGGAGGAGGTTATGGTCCACCACCACAGATGGGGGGGATGCCTCCAATGCCACCGTTTGGAATGCCACCTATGGGTTCATACTGA
Network for GWHGAAZE003309
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF01394.21
Clathrin_propel
20
55
3.10E-07
PF01394.21
Clathrin_propel
154
197
3.20E-10
PF09268.11
Clathrin-link
344
367
8.80E-09
PF13838.7
Clathrin_H_link
369
434
4.10E-28
PF00637.21
Clathrin
557
690
2.90E-21
PF00637.21
Clathrin
701
840
1.20E-21
PF00637.21
Clathrin
850
983
1.10E-28
PF00637.21
Clathrin
993
1131
4.60E-31
PF00637.21
Clathrin
1147
1281
2.10E-26
PF00637.21
Clathrin
1289
1431
3.90E-27
PF00637.21
Clathrin
1440
1579
4.30E-29
Protein Sequence
>GWHPAAZE003312 MAAANAPITMKESLTLPSIGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMSMPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMPEQVVFWKWITTKLLGLVTQTSVYHWSIEGDSEPVKMFDRTANLANNQIINYRCDPSEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFASFKVPGNENPSIIISFATKSSNAGQITSKLHIIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIFVITKLGLLFVYDLETATAVYRNRISPDPIFLTAEALSVGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVLQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQSGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYMFLLQTILRSDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLFVRALQHYSELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQVAKEYSEQLGVDQCIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKAKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNRNSLFKLQARYVVERMDGDLWEKVLNPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIQSIPRAVEFAFRVEEDAVWSQVGKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDGDVYHDLVRYLLMVRQKAKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLHSVGDRLYDEALYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRHEKLMEHVKLFSTRLNIPKLIRACDEQQHWMELTYLYIQYDEFDNAAITVMNHSPEAWDHMQFKDIAVKVSNVELYYKAVHFYLKEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNHYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELAWMNNMTDFAFPYLLQFIREYTGKVDELIKDKIEAVNEMKAKENEEKDVIKQQNMYAQLLPLALPAPPMPGMGGSGMGGGYGPPPQMGGMPPMPPFGMPPMGSY
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K04646
CLTC
Endocytosis
map04144
Lysosome
map04142
Endocrine and other factor-regulated calcium reabsorption
map04961
Synaptic vesicle cycle
map04721
Gene Ontology
GO term
Ontology
Name
GO:0006886
biological_process
intracellular protein transport
GO:0016192
biological_process
vesicle-mediated transport
GO:0030130
cellular_component
clathrin coat of trans-Golgi network vesicle
GO:0030132
cellular_component
clathrin coat of coated pit
GO:0071439
cellular_component
clathrin complex
GO:0005515
molecular_function
protein binding
GO:0005198
molecular_function
structural molecule activity
GO:0032051
molecular_function
clathrin light chain binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
61.525
SRR3591706
second leaf
39.937
SRR3591707
mature leaf
23.267
SRR3591708
Shoot apex
32.124
SRR3591709
Stem
36.635
SRR3591710
White floral bud
29.086
SRR3591711
White flower
32.697
SRR3591712
Green floral bud
36.905
SRR3591713
Yellow flower
23.638
SRP173429
SRR8316895
Juvenile bud stage
22.201
SRR8316896
Juvenile bud stage
31.742
SRR8316897
Juvenile bud stage
16.389
SRR8316894
Third green stage
16.190
SRR8316900
Third green stage
39.569
SRR8316901
Third green stage
36.047
SRR8316898
Complete white stage
8.517
SRR8316899
Complete white stage
27.433
SRR8316903
Complete white stage
23.171
SRR8316902
Silver flowering stage
11.597
SRR8316904
Silver flowering stage
21.582
SRR8316905
Silver flowering stage
8.036
SRR8316906
Gold flowering stage
28.099
SRR8316907
Gold flowering stage
27.647
SRR8316908
Gold flowering stage
27.956
SRP132670
SRR6706286
Control
33.141
SRR6706287
Light intensity 50%
38.762
SRR6706288
Light intensity 20%
42.437
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
18.482
CNS0095593
Slightly white alabastrum(diploid) 2
19.163
CNS0095594
Slightly white alabastrum(diploid) 3
16.744
CNS0095595
Whole white alabastrum(diploid) 2
17.075
CNS0095596
Whole white alabastrum(diploid) 3
17.205
CNS0095597
Whole white alabastrum(diploid) 4
15.124
CNS0095598
Silvery flower (diploied) 1
18.282
CNS0095599
Silvery flower (diploied) 2
16.940
CNS0095600
Silvery flower (diploied) 3
29.607
CNS0095601
Golden flower (diploid) 1
14.196
CNS0095602
Golden flower (diploid) 2
27.706
CNS0095603
Golden flower (diploid) 3
28.366
CNS0095604
Slightly white alabastrum(tetraploid) 1
26.541
CNS0095605
Slightly white alabastrum(tetraploid) 2
20.002
CNS0095606
Slightly white alabastrum(tetraploid) 3
55.636
CNS0095607
Whole white alabastrum(tetraploid) 1
18.040
CNS0095608
Whole white alabastrum(tetraploid) 2
15.321
CNS0095609
Whole white alabastrum(tetraploid) 3
44.510
CNS0095610
Silvery flower (tetraploid) 1
32.897
CNS0095611
Silvery flower (tetraploid) 2
26.529
CNS0095612
Silvery flower (tetraploid) 3
22.534
CNS0095613
Golden flower (tetraploid) 1
15.048
CNS0095614
Golden flower (tetraploid) 2
28.095
CNS0095615
Golden flower (tetraploid) 3
23.235
CRA001975
CRR073297
Stem 1
47.716
CRR073298
Stem 2
44.058
CRR073299
Stem 3
26.667
CRR073300
Leaf 1
52.160
CRR073301
Leaf 2
45.267
CRR073302
Leaf 3
28.320
CRR073303
Juvenile bud 1
32.359
CRR073304
Juvenile bud 2
21.576
CRR073305
Juvenile bud 3
39.543
CRR073306
Third green 1
10.690
CRR073307
Third green 2
7.776
CRR073308
Third green 3
12.117
CRR073309
Second white 1
10.005
CRR073310
Second white 2
13.919
CRR073311
Second white 3
13.366
CRR073312
Silver flowering 1
11.518
CRR073313
Silver flowering 2
11.850
CRR073314
Silver flowering 3
11.997
CRR073315
Gold flowering 1
11.681
CRR073316
Gold flowering 2
19.838
CRR073317
Gold flowering 3
9.976
CRR073318
Tawny withering 1
26.693
CRR073319
Tawny withering 2
20.735
CRR073320
Tawny withering 3
28.176