Detail information of GWHGAAZE003309


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13994.10unnamed protein product [Coffea canephora]
Swissprottr|Q0WNJ6|CLAH1_ARATH0Clathrin heavy chain 1
trEMBLtr|A0A068V0E9|A0A068V0E9_COFCA0Clathrin heavy chain {ECO:0000256|PIRNR:PIRNR002290}
TAIR10AT3G11130.10Clathrin, heavy chain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9582535395838685+
GWHAAZE00000001mRNA9582535395838685+
GWHAAZE00000001exon9582535395825397+
GWHAAZE00000001exon9582576495825968+
GWHAAZE00000001exon9582663395826721+
GWHAAZE00000001exon9582684295826920+
GWHAAZE00000001exon9582705095827177+
GWHAAZE00000001exon9582747295827570+
GWHAAZE00000001exon9582766995827777+
GWHAAZE00000001exon9582845295828531+
GWHAAZE00000001exon9582860595828832+
GWHAAZE00000001exon9582891895828983+
GWHAAZE00000001exon9582950995829625+
GWHAAZE00000001exon9583131695831513+
GWHAAZE00000001exon9583163295831748+
GWHAAZE00000001exon9583182395831882+
GWHAAZE00000001exon9583203995832125+
GWHAAZE00000001exon9583230795832390+
GWHAAZE00000001exon9583247495832608+
GWHAAZE00000001exon9583269195832753+
GWHAAZE00000001exon9583282995832933+
GWHAAZE00000001exon9583304295833154+
GWHAAZE00000001exon9583326695833518+
GWHAAZE00000001exon9583360895833744+
GWHAAZE00000001exon9583382395834101+
GWHAAZE00000001exon9583419195835193+
GWHAAZE00000001exon9583533395835818+
GWHAAZE00000001exon9583590995836079+
GWHAAZE00000001exon9583617095836355+
GWHAAZE00000001exon9583777495837896+
GWHAAZE00000001exon9583826595838375+
GWHAAZE00000001exon9583853095838685+
GWHAAZE00000001CDS9582535395825397+
GWHAAZE00000001CDS9582576495825968+
GWHAAZE00000001CDS9582663395826721+
GWHAAZE00000001CDS9582684295826920+
GWHAAZE00000001CDS9582705095827177+
GWHAAZE00000001CDS9582747295827570+
GWHAAZE00000001CDS9582766995827777+
GWHAAZE00000001CDS9582845295828531+
GWHAAZE00000001CDS9582860595828832+
GWHAAZE00000001CDS9582891895828983+
GWHAAZE00000001CDS9582950995829625+
GWHAAZE00000001CDS9583131695831513+
GWHAAZE00000001CDS9583163295831748+
GWHAAZE00000001CDS9583182395831882+
GWHAAZE00000001CDS9583203995832125+
GWHAAZE00000001CDS9583230795832390+
GWHAAZE00000001CDS9583247495832608+
GWHAAZE00000001CDS9583269195832753+
GWHAAZE00000001CDS9583282995832933+
GWHAAZE00000001CDS9583304295833154+
GWHAAZE00000001CDS9583326695833518+
GWHAAZE00000001CDS9583360895833744+
GWHAAZE00000001CDS9583382395834101+
GWHAAZE00000001CDS9583419195835193+
GWHAAZE00000001CDS9583533395835818+
GWHAAZE00000001CDS9583590995836079+
GWHAAZE00000001CDS9583617095836355+
GWHAAZE00000001CDS9583777495837896+
GWHAAZE00000001CDS9583826595838375+
GWHAAZE00000001CDS9583853095838685+
Transcript Sequence

Network for GWHGAAZE003309

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01394.21Clathrin_propel20553.10E-07
PF01394.21Clathrin_propel1541973.20E-10
PF09268.11Clathrin-link3443678.80E-09
PF13838.7Clathrin_H_link3694344.10E-28
PF00637.21Clathrin5576902.90E-21
PF00637.21Clathrin7018401.20E-21
PF00637.21Clathrin8509831.10E-28
PF00637.21Clathrin99311314.60E-31
PF00637.21Clathrin114712812.10E-26
PF00637.21Clathrin128914313.90E-27
PF00637.21Clathrin144015794.30E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04646CLTC Endocytosis map04144
Lysosomemap04142
Endocrine and other factor-regulated calcium reabsorptionmap04961
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0016192biological_processvesicle-mediated transport
GO:0030130cellular_componentclathrin coat of trans-Golgi network vesicle
GO:0030132cellular_componentclathrin coat of coated pit
GO:0071439cellular_componentclathrin complex
GO:0005515molecular_functionprotein binding
GO:0005198molecular_functionstructural molecule activity
GO:0032051molecular_functionclathrin light chain binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf61.525
SRR3591706second leaf39.937
SRR3591707mature leaf23.267
SRR3591708Shoot apex32.124
SRR3591709Stem36.635
SRR3591710White floral bud29.086
SRR3591711White flower32.697
SRR3591712Green floral bud36.905
SRR3591713Yellow flower23.638
SRP173429 SRR8316895Juvenile bud stage 22.201
SRR8316896Juvenile bud stage 31.742
SRR8316897Juvenile bud stage 16.389
SRR8316894Third green stage 16.190
SRR8316900Third green stage 39.569
SRR8316901Third green stage 36.047
SRR8316898Complete white stage 8.517
SRR8316899Complete white stage 27.433
SRR8316903Complete white stage 23.171
SRR8316902Silver flowering stage11.597
SRR8316904Silver flowering stage21.582
SRR8316905Silver flowering stage8.036
SRR8316906Gold flowering stage 28.099
SRR8316907Gold flowering stage 27.647
SRR8316908Gold flowering stage 27.956
SRP132670SRR6706286Control33.141
SRR6706287Light intensity 50%38.762
SRR6706288Light intensity 20%42.437
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.482
CNS0095593Slightly white alabastrum(diploid) 219.163
CNS0095594Slightly white alabastrum(diploid) 316.744
CNS0095595Whole white alabastrum(diploid) 217.075
CNS0095596Whole white alabastrum(diploid) 317.205
CNS0095597Whole white alabastrum(diploid) 415.124
CNS0095598Silvery flower (diploied) 118.282
CNS0095599Silvery flower (diploied) 216.940
CNS0095600Silvery flower (diploied) 329.607
CNS0095601Golden flower (diploid) 114.196
CNS0095602Golden flower (diploid) 227.706
CNS0095603Golden flower (diploid) 328.366
CNS0095604Slightly white alabastrum(tetraploid) 126.541
CNS0095605Slightly white alabastrum(tetraploid) 220.002
CNS0095606Slightly white alabastrum(tetraploid) 355.636
CNS0095607Whole white alabastrum(tetraploid) 118.040
CNS0095608Whole white alabastrum(tetraploid) 215.321
CNS0095609Whole white alabastrum(tetraploid) 344.510
CNS0095610Silvery flower (tetraploid) 132.897
CNS0095611Silvery flower (tetraploid) 226.529
CNS0095612Silvery flower (tetraploid) 322.534
CNS0095613Golden flower (tetraploid) 115.048
CNS0095614Golden flower (tetraploid) 228.095
CNS0095615Golden flower (tetraploid) 323.235
CRA001975CRR073297Stem 147.716
CRR073298Stem 244.058
CRR073299Stem 326.667
CRR073300Leaf 152.160
CRR073301Leaf 245.267
CRR073302Leaf 328.320
CRR073303Juvenile bud 132.359
CRR073304Juvenile bud 221.576
CRR073305Juvenile bud 339.543
CRR073306Third green 110.690
CRR073307Third green 27.776
CRR073308Third green 312.117
CRR073309Second white 110.005
CRR073310Second white 213.919
CRR073311Second white 313.366
CRR073312Silver flowering 111.518
CRR073313Silver flowering 211.850
CRR073314Silver flowering 311.997
CRR073315Gold flowering 111.681
CRR073316Gold flowering 219.838
CRR073317Gold flowering 39.976
CRR073318Tawny withering 126.693
CRR073319Tawny withering 220.735
CRR073320Tawny withering 328.176