Gene detail

Detail information of GWHGAAZE003302

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010658266.1	0	PREDICTED: dual specificity protein kinase CLK1 isoform X1 [Vitis vinifera]
COG	YP_002489870.1	2E-18	serine/threonine protein kinase
Swissprot	tr\|P51567\|AFC2_ARATH	2E-45	Serine/threonine-protein kinase AFC2
trEMBL	tr\|D7T4P1\|D7T4P1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI25473.3}
TAIR10	AT2G40120.1	1E-171	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	95659809	95664049	-
GWHAAZE00000001	mRNA	95659809	95664049	-
GWHAAZE00000001	exon	95663797	95664049	-
GWHAAZE00000001	exon	95662390	95663143	-
GWHAAZE00000001	exon	95661483	95661762	-
GWHAAZE00000001	exon	95661245	95661352	-
GWHAAZE00000001	exon	95660877	95661155	-
GWHAAZE00000001	exon	95660380	95660523	-
GWHAAZE00000001	exon	95659809	95660257	-
GWHAAZE00000001	CDS	95663797	95664049	-
GWHAAZE00000001	CDS	95662390	95663143	-
GWHAAZE00000001	CDS	95661483	95661762	-
GWHAAZE00000001	CDS	95661245	95661352	-
GWHAAZE00000001	CDS	95660877	95661155	-
GWHAAZE00000001	CDS	95660380	95660523	-
GWHAAZE00000001	CDS	95660069	95660257	-
GWHAAZE00000001	three_prime_UTR	95659809	95660068	-

Transcript Sequence
>GWHTAAZE003308 ATGGCGGTCTCCGATATCGAAGCTGTATTGGAATTCCTAAGGAAGAATGGTCTCTCAGAGTCCGAATCAGCCCTCATGGAAGATGTACTTGAGAAATCCGAATTGGGTTCTGTCGATTTCCAGAGGTTTCTCTTTCCGATGGTCCCCCCACCTCCGGCGCTCAAGATTCCGGCCACTGGGATTCCTCGCCGGGAAATGGTCGAGGAGTTCTCCGATTCTTCTGATGATGAGTTCGTGAGCTTGGGATCTTCAGAATTCACAAATCCGTACGGAATTCACTCGGCGACAGGGGCTAGTTCTCAGTCTTCATCAGATCGTTTGTCCCAATTTGGTACGGCCCGTGATTACCATGATTTCGATATGCAAAATGACCTTTCCTGGTACGAGGAGAAAGATGAAGACTACCCTATGCCTCCTATCTTTAACAGTTCAGATTCCTTTGGTGGCCCGAGTGAGGACAAGTTTGTAATGACCACAGAAAAGCAAAGAGATGATCAGATGGTTCTTAATCACATCTCAGAAGGATTTCAATCAGTTGAGGGAACTAATTATCTAGACAAACCCTGGCCTTTTACCGCCATAGATGATGTAAAAGATGAAGTTCATGTTAGAGATTATTATAATTTGGATGAAAGTGTCCTTCTCAAGGGAGGTGATGACCTTACAGTCAACAGCCTCACGAATTTCAATAGAGCGGAATCGGATGAACCCTCTAAATGTTTGTCAACCGTGGATCATAAATCTAATAAGAATTGGAGTTCTCCTAACAAAAGGAATTCCATATATGACTTGGTTGGACACTTAAAAAATACCTCTGGCCTAAATACCAAGGTTGTCGAGAAAGATTTCTACCTGAGTGGAAATGATGGCTATGAAGCTGGAAATGATAGAGATGAGGCTGCTGCAGATGAAGAGGATAGCACTAGAAGCGACGAGCTGCTGACGTATGTCACTACTGAGGATGAATACGAAGTATTCAATCTAAGAATTATACACAGAAAGAACAGGACTGGGTTTGAAGAGAACAAGGATCTGCCTATTGTCATAAATAGTATGATTGCAGGCAGATATTATGTTACGGAATACCTTGGCTCTGCAGCTTTCAGCAAAGTTGTTCAGGCGCATGATCTTTACACAGGAGTGGATGTTTGCTTAAAAATAATAAAAAATGACAAGGATTTCTTTGATCAGAGTTTAGATGAAATCAAACTTTTGAAGTTTGTAAACAAGCATGATCCAGGAGATGAACGCCACATTTTACGTCTTTACGATTATTTCTATTTTCAGGAGCATCTATTCATCGTTTGCGAACTTCTACGGGCAAACTTATACGAATTTCAGAAATATAATCGAGAATCTTGCGGAGAGCCTTATTTTACATTGAACAGGCTGCAGGTCATTACCCGGCAATGTTTGGAGGCCTTGGAATTCTTGCATGACTTGGGAATCATCCACTGTGATCTAAAGCCTGAAAATATTCTTATAAAAAGTTATCGAAGATGCGAGATAAAGGTTATTGATCTAGGAAGCAGTTGCTTTCAGACTGACAACTTGTGCCTTTATGTACAGTCTCGATCATATAGGGCTCCTGAAGTCATCCTCGGGTTACAGTATGACCAGAAGATTGATCTCTGGTCGCTTGGTTGTATCTTGGCTGAGTTATGTTCTGGTGAAGTTCTTTTTCCAAATGACGGAATTGTAATGTCCCTTGCACGGATGGTGGGGTTTCTTGGTCCTATTGATACAGAAATGTTAGTGAAGGGGCAGGAGACACACAAGTATTTCACCAAAGAATTTGATCTTTATCATGTAAACGAGGAGGCAAATGAATTGGAGTACATAATCCCAGCAGAATCATCACTGGAGGAACAGCTGCAGGTTACTGATATTGGGTTTACTGATTTTGTAAGAGACTTACTTGAGATTAATCCGCAGAGGCGCCCTACTGCGAGGGAGGCACTAGCACACCCCTGGCTTTCTTATTCCTATGAGGTTAATTCTTGCTGAATTTTGGATTACTGGAAGTTTATTTTCTTCCGCGTTGATCGAGTCTGTTTTGAGGTAACTTGTGAGCATATTAAATAGCTTTCCTGTCCTGTTGTATATGAATTTGTTGTTTCTTTATTCGTTGGAAATGAATAATTTGGTCATGGTTCAGGGATTCTCGCTTCAAAGAAAATATAATGTTGCTCCCTGTGTGAATACAAACACCTTCAACCACTTGAACTTAAGACAGGATGTTTCTATTTTATTATTTGGTTGTAAAA

Network for GWHGAAZE003302

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	359	659	2.50E-49

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_DYRK-PRP4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.702
	SRR3591706	second leaf	16.723
	SRR3591707	mature leaf	16.729
	SRR3591708	Shoot apex	25.515
	SRR3591709	Stem	113.863
	SRR3591710	White floral bud	50.776
	SRR3591711	White flower	32.667
	SRR3591712	Green floral bud	13.452
	SRR3591713	Yellow flower	17.269
SRP173429	SRR8316895	Juvenile bud stage	9.243
	SRR8316896	Juvenile bud stage	8.459
	SRR8316897	Juvenile bud stage	3.579
	SRR8316894	Third green stage	6.050
	SRR8316900	Third green stage	11.426
	SRR8316901	Third green stage	10.668
	SRR8316898	Complete white stage	8.329
	SRR8316899	Complete white stage	19.044
	SRR8316903	Complete white stage	14.018
	SRR8316902	Silver flowering stage	8.861
	SRR8316904	Silver flowering stage	15.461
	SRR8316905	Silver flowering stage	6.062
	SRR8316906	Gold flowering stage	9.677
	SRR8316907	Gold flowering stage	15.242
	SRR8316908	Gold flowering stage	13.522
SRP132670	SRR6706286	Control	7.397
	SRR6706287	Light intensity 50%	7.892
	SRR6706288	Light intensity 20%	8.589
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.113
	CNS0095593	Slightly white alabastrum(diploid) 2	8.775
	CNS0095594	Slightly white alabastrum(diploid) 3	4.911
	CNS0095595	Whole white alabastrum(diploid) 2	5.200
	CNS0095596	Whole white alabastrum(diploid) 3	5.363
	CNS0095597	Whole white alabastrum(diploid) 4	4.114
	CNS0095598	Silvery flower (diploied) 1	6.462
	CNS0095599	Silvery flower (diploied) 2	5.266
	CNS0095600	Silvery flower (diploied) 3	9.293
	CNS0095601	Golden flower (diploid) 1	2.271
	CNS0095602	Golden flower (diploid) 2	4.427
	CNS0095603	Golden flower (diploid) 3	3.491
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.930
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.580
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.274
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.838
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.300
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.286
	CNS0095610	Silvery flower (tetraploid) 1	18.891
	CNS0095611	Silvery flower (tetraploid) 2	12.059
	CNS0095612	Silvery flower (tetraploid) 3	25.752
	CNS0095613	Golden flower (tetraploid) 1	4.086
	CNS0095614	Golden flower (tetraploid) 2	8.065
	CNS0095615	Golden flower (tetraploid) 3	2.878
CRA001975	CRR073297	Stem 1	7.205
	CRR073298	Stem 2	5.889
	CRR073299	Stem 3	5.384
	CRR073300	Leaf 1	6.054
	CRR073301	Leaf 2	5.467
	CRR073302	Leaf 3	4.527
	CRR073303	Juvenile bud 1	5.437
	CRR073304	Juvenile bud 2	2.937
	CRR073305	Juvenile bud 3	8.186
	CRR073306	Third green 1	22.485
	CRR073307	Third green 2	17.985
	CRR073308	Third green 3	18.965
	CRR073309	Second white 1	22.036
	CRR073310	Second white 2	19.686
	CRR073311	Second white 3	14.598
	CRR073312	Silver flowering 1	9.489
	CRR073313	Silver flowering 2	10.349
	CRR073314	Silver flowering 3	11.080
	CRR073315	Gold flowering 1	1.278
	CRR073316	Gold flowering 2	1.689
	CRR073317	Gold flowering 3	1.107
	CRR073318	Tawny withering 1	15.578
	CRR073319	Tawny withering 2	12.830
	CRR073320	Tawny withering 3	25.649