Detail information of GWHGAAZE003300


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011084907.10PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Sesamum indicum]
COGYP_001543477.12E-21serine/threonine kinase
Swissprottr|Q9LY50|ACCR3_ARATH0Putative serine/threonine-protein kinase-like protein CCR3 (Precursor)
trEMBLtr|A0A068V294|A0A068V294_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_78 {ECO:0000313|EMBL:CDP14018.1}
TAIR10AT3G55950.14E-160CRINKLY4 related 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9558678795589153-
GWHAAZE00000001mRNA9558678795589153-
GWHAAZE00000001exon9558827495589153-
GWHAAZE00000001exon9558678795588036-
GWHAAZE00000001CDS9558827495589153-
GWHAAZE00000001CDS9558678795588036-
Transcript Sequence

Network for GWHGAAZE003300

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase4016813.00E-43
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_CR4L

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.051
SRR3591706second leaf5.787
SRR3591707mature leaf6.832
SRR3591708Shoot apex7.982
SRR3591709Stem11.186
SRR3591710White floral bud8.492
SRR3591711White flower9.465
SRR3591712Green floral bud6.340
SRR3591713Yellow flower8.716
SRP173429 SRR8316895Juvenile bud stage 6.743
SRR8316896Juvenile bud stage 6.478
SRR8316897Juvenile bud stage 3.219
SRR8316894Third green stage 2.421
SRR8316900Third green stage 4.382
SRR8316901Third green stage 5.984
SRR8316898Complete white stage 4.773
SRR8316899Complete white stage 16.333
SRR8316903Complete white stage 6.222
SRR8316902Silver flowering stage3.417
SRR8316904Silver flowering stage5.832
SRR8316905Silver flowering stage2.644
SRR8316906Gold flowering stage 9.102
SRR8316907Gold flowering stage 7.662
SRR8316908Gold flowering stage 13.859
SRP132670SRR6706286Control6.253
SRR6706287Light intensity 50%7.075
SRR6706288Light intensity 20%8.354
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.648
CNS0095593Slightly white alabastrum(diploid) 27.622
CNS0095594Slightly white alabastrum(diploid) 39.820
CNS0095595Whole white alabastrum(diploid) 25.427
CNS0095596Whole white alabastrum(diploid) 35.270
CNS0095597Whole white alabastrum(diploid) 45.411
CNS0095598Silvery flower (diploied) 18.439
CNS0095599Silvery flower (diploied) 27.366
CNS0095600Silvery flower (diploied) 39.021
CNS0095601Golden flower (diploid) 15.574
CNS0095602Golden flower (diploid) 28.265
CNS0095603Golden flower (diploid) 37.891
CNS0095604Slightly white alabastrum(tetraploid) 16.170
CNS0095605Slightly white alabastrum(tetraploid) 25.551
CNS0095606Slightly white alabastrum(tetraploid) 37.633
CNS0095607Whole white alabastrum(tetraploid) 13.528
CNS0095608Whole white alabastrum(tetraploid) 22.847
CNS0095609Whole white alabastrum(tetraploid) 34.722
CNS0095610Silvery flower (tetraploid) 18.999
CNS0095611Silvery flower (tetraploid) 26.119
CNS0095612Silvery flower (tetraploid) 313.550
CNS0095613Golden flower (tetraploid) 14.842
CNS0095614Golden flower (tetraploid) 27.642
CNS0095615Golden flower (tetraploid) 33.401
CRA001975CRR073297Stem 110.439
CRR073298Stem 29.265
CRR073299Stem 39.597
CRR073300Leaf 112.737
CRR073301Leaf 211.061
CRR073302Leaf 38.006
CRR073303Juvenile bud 114.281
CRR073304Juvenile bud 213.104
CRR073305Juvenile bud 315.113
CRR073306Third green 126.389
CRR073307Third green 220.283
CRR073308Third green 322.963
CRR073309Second white 129.321
CRR073310Second white 220.860
CRR073311Second white 317.481
CRR073312Silver flowering 119.063
CRR073313Silver flowering 223.856
CRR073314Silver flowering 321.261
CRR073315Gold flowering 13.460
CRR073316Gold flowering 25.045
CRR073317Gold flowering 33.841
CRR073318Tawny withering 17.159
CRR073319Tawny withering 223.119
CRR073320Tawny withering 36.934