Detail information of GWHGAAZE003254


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADW08704.13.07204E-43heat shock protein [Gossypium hirsutum]
COGYP_003798088.12E-18heat shock protein, hsp20 family
Swissprottr|P27879|HSP11_MEDSA3E-4318.1 kDa class I heat shock protein (Fragment)
trEMBLtr|E9NS18|E9NS18_GOSHI1E-43Heat shock protein {ECO:0000313|EMBL:ADW08704.1}
TAIR10AT1G53540.12E-26HSP20-like chaperones superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9481682994817185-
GWHAAZE00000001mRNA9481682994817185-
GWHAAZE00000001exon9481712594817185-
GWHAAZE00000001exon9481682994817088-
GWHAAZE00000001CDS9481712594817185-
GWHAAZE00000001CDS9481682994817088-
Transcript Sequence

Network for GWHGAAZE003254

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00011.22HSP20271072.00E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13993HSP20 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.237
SRR3591706second leaf0.000
SRR3591707mature leaf0.264
SRR3591708Shoot apex1.024
SRR3591709Stem0.765
SRR3591710White floral bud0.253
SRR3591711White flower0.385
SRR3591712Green floral bud1.236
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.442
SRR8316896Juvenile bud stage 0.521
SRR8316897Juvenile bud stage 0.796
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.302
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.057
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.159
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.481
SRR6706287Light intensity 50%0.253
SRR6706288Light intensity 20%0.250
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.420
CNS0095593Slightly white alabastrum(diploid) 20.054
CNS0095594Slightly white alabastrum(diploid) 30.341
CNS0095595Whole white alabastrum(diploid) 20.208
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.810
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.148
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.015
CNS0095604Slightly white alabastrum(tetraploid) 10.264
CNS0095605Slightly white alabastrum(tetraploid) 20.876
CNS0095606Slightly white alabastrum(tetraploid) 30.406
CNS0095607Whole white alabastrum(tetraploid) 11.049
CNS0095608Whole white alabastrum(tetraploid) 20.650
CNS0095609Whole white alabastrum(tetraploid) 31.830
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.015
CNS0095612Silvery flower (tetraploid) 30.081
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.517
CRA001975CRR073297Stem 10.651
CRR073298Stem 20.179
CRR073299Stem 30.865
CRR073300Leaf 10.611
CRR073301Leaf 20.252
CRR073302Leaf 30.304
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 21.335
CRR073305Juvenile bud 30.168
CRR073306Third green 10.000
CRR073307Third green 20.226
CRR073308Third green 30.110
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.159
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.031
CRR073316Gold flowering 20.445
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.945
CRR073320Tawny withering 30.139