Gene detail

Detail information of GWHGAAZE003219

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006355698.1	0	PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Solanum tuberosum]
COG	YP_006915967.1	7E-23	PASTA sensor-containing serine/threonine protein kinase
Swissprot	tr\|Q9M2S4\|LRKS4_ARATH	0	L-type lectin-domain containing receptor kinase S.4 (Precursor)
trEMBL	tr\|M1CL65\|M1CL65_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400069794}
TAIR10	AT3G55550.1	2E-161	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	94156506	94158516	-
GWHAAZE00000001	mRNA	94156506	94158516	-
GWHAAZE00000001	exon	94156506	94156670	-
GWHAAZE00000001	exon	94156781	94157324	-
GWHAAZE00000001	exon	94157462	94158516	-
GWHAAZE00000001	CDS	94157462	94158516	-
GWHAAZE00000001	CDS	94156781	94157324	-
GWHAAZE00000001	CDS	94156506	94156670	-

Transcript Sequence
>GWHTAAZE003225 ATGTGGAGGAGGAATAAAGGAAAAGAAGAATAATTCTAAGCTTTAATAATTACAAATAATAATGCTAATTTATGTTGGAGAATATCATCATTCAATATCATCATTTCTAACAACAACCATGTTGGCATCGATTTAAACAGCCTAAAATCAAATGCTTCTGTTGCTGCAGCAGCCTATTGTGTCAACAACGGCGGCAATTCTTCAAAGCAACCTCTCTATCTGCAAAGTGGAAAGACAATTCAGGCCTGGATTGATTACAATTCTAAAGAAAACCAATTGAATGTTACACTTTCACTTTCTTCATCAAAACCCACTTCTTCAATCTTATCATTTCCTGCTGATCTTTCACCATTCCTCAATGATTCCATGTATGTAGGCTTCTCTTCTTCCACTGGTCTACTAGCAAGCTCTCACTATATAGTCGGTTGGAGCTTTAAGATGAATGGACAGGCTCAATCACTCAATTTATCATCTTTACCTTCTCTTCCTCGATCCAAAAAGAATCAAAAGGCCTTAATTGCAGGCGTATCAGTAGCTTCCATTACTTTGATTTTGCTTTCAATTGGCATTGCTGTATACTTAATCAGAAAGACCTACAAAACAGAGGTAATCCAAGACTGGGAGCTTCATGTTGGCCCTCATAGATTCTCCTACAAAGAGCTAAAGCAAGCTACCAGTGGATTCAGAGACAAAGAAGTACTTGGGTTTGGCGGATTTGGTCGAGTTTACAGAGGAACTCTATCAAATTCAAAAACCCAAATCGCAGTTAAGCGAATTTCCCACGAATCAAAACAGGGTTTGAGGGAATTCGTGTCGGAGATTTCTAGTATCGGCCGGCTCCGCCACCGGAATCTGGTCCAATTAATTGGATGGTGTCGAAAAAGAGGAGATCTGTTGCTCGTCTACGATTTCATGCCTAATGGAAGCTTAGATAATTACATTTATGAAAACCCTAAAATAATATTAACTTGGGAGCAGAGATTCAAGATTATCAGAGGTGTTGCAAGTGGGTTACTGTACTTGCACGAAGAATGGGAACAAACCGTGATTCACAGAGACATAAAAGCCGGCAATGTATTGTTAGACTCGGAACTAAACGGCCGGTTGGGTGATTTCGGGCTGGCTAAATTGTACGAGCACGGATCAAATCCGGGCACAACGAAGGTTGTGGGCACACTAGGTTATATAGCGCCAGAGCTCACCCGGACCGGCAAGCCTACGACGAGCTCCGATGTGTTTGCATTTGGGGCATTAATGCTTGAAGTTGTGTGTGGGAGGAGACCGGTTGAGCAGAAAGCTTTGCCGGAGGAGCTAATTTTGGTGGATTGGGTTTGGGATAAGTTTAAAGAAGGGAATGTATTAGATGTGGTGGACAAAAGGTTGAGAGGTGAGTATGAAGAAGGGGAGGTAATGGTGGTGGTGAAGTTAGGGTTGATGTGTTCGGATAATGTGGCAGCAGAGAGGCCGAGTATGAGGCAGGTGGTGAGATATTTGGATGGAGAGGTGGGGTTGCCGGAATTGTATGAGAGGAAGAAGAGTGGTGGTGGGGAGGTGGAGGATTTTTCGCATTCTTATCCATCGTTGTCTTATTTTGAGAAAGAAGAAGAGTGGTGGTGGGAGGTGGAGGATTTTTCACATTTTTATCCATTGTCGTCTTATTTTGAGAAAGTGAGTGGTCAATTGTTAGTGATGATGGTGAGGCGGATGTTAGTGGTGGTGGTGAGTCTGTATTGGCAAGAGATAGATCGCGGATACCCGCCTTAG

Network for GWHGAAZE003219

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	35	157	6.90E-32
PF00069.26	Pkinase	227	430	8.70E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.832
	SRR3591706	second leaf	15.657
	SRR3591707	mature leaf	13.568
	SRR3591708	Shoot apex	12.883
	SRR3591709	Stem	10.558
	SRR3591710	White floral bud	7.213
	SRR3591711	White flower	8.599
	SRR3591712	Green floral bud	2.560
	SRR3591713	Yellow flower	1.999
SRP173429	SRR8316895	Juvenile bud stage	1.092
	SRR8316896	Juvenile bud stage	1.424
	SRR8316897	Juvenile bud stage	0.728
	SRR8316894	Third green stage	0.377
	SRR8316900	Third green stage	0.974
	SRR8316901	Third green stage	0.900
	SRR8316898	Complete white stage	0.231
	SRR8316899	Complete white stage	1.103
	SRR8316903	Complete white stage	0.444
	SRR8316902	Silver flowering stage	0.062
	SRR8316904	Silver flowering stage	0.125
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	1.094
	SRR8316908	Gold flowering stage	0.942
SRP132670	SRR6706286	Control	1.437
	SRR6706287	Light intensity 50%	1.129
	SRR6706288	Light intensity 20%	0.962
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.749
	CNS0095593	Slightly white alabastrum(diploid) 2	0.701
	CNS0095594	Slightly white alabastrum(diploid) 3	0.805
	CNS0095595	Whole white alabastrum(diploid) 2	0.450
	CNS0095596	Whole white alabastrum(diploid) 3	0.399
	CNS0095597	Whole white alabastrum(diploid) 4	0.467
	CNS0095598	Silvery flower (diploied) 1	1.173
	CNS0095599	Silvery flower (diploied) 2	1.918
	CNS0095600	Silvery flower (diploied) 3	0.470
	CNS0095601	Golden flower (diploid) 1	2.054
	CNS0095602	Golden flower (diploid) 2	1.445
	CNS0095603	Golden flower (diploid) 3	1.744
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.382
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.653
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.488
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.303
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.906
	CNS0095610	Silvery flower (tetraploid) 1	1.282
	CNS0095611	Silvery flower (tetraploid) 2	2.424
	CNS0095612	Silvery flower (tetraploid) 3	0.644
	CNS0095613	Golden flower (tetraploid) 1	0.390
	CNS0095614	Golden flower (tetraploid) 2	2.045
	CNS0095615	Golden flower (tetraploid) 3	0.422
CRA001975	CRR073297	Stem 1	1.155
	CRR073298	Stem 2	1.292
	CRR073299	Stem 3	2.864
	CRR073300	Leaf 1	0.946
	CRR073301	Leaf 2	1.336
	CRR073302	Leaf 3	1.309
	CRR073303	Juvenile bud 1	0.711
	CRR073304	Juvenile bud 2	0.563
	CRR073305	Juvenile bud 3	0.885
	CRR073306	Third green 1	0.025
	CRR073307	Third green 2	0.068
	CRR073308	Third green 3	0.068
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.237
	CRR073314	Silver flowering 3	0.075
	CRR073315	Gold flowering 1	1.913
	CRR073316	Gold flowering 2	2.263
	CRR073317	Gold flowering 3	2.663
	CRR073318	Tawny withering 1	2.269
	CRR073319	Tawny withering 2	2.319
	CRR073320	Tawny withering 3	2.091