Gene detail

Detail information of GWHGAAZE003196

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008233621.1	1.88905E-97	PREDICTED: clathrin interactor 1-like [Prunus mume]
Swissprot	tr\|Q93YP4\|EPN3_ARATH	7E-19	Clathrin interactor EPSIN 3
trEMBL	tr\|M5XQI6\|M5XQI6_PRUPE	2E-95	Uncharacterized protein {ECO:0000313\|EMBL:EMJ21300.1}
TAIR10	AT3G46540.1	1E-60	ENTH/VHS family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93711720	93712882	-
GWHAAZE00000001	mRNA	93711720	93712882	-
GWHAAZE00000001	exon	93711720	93712083	-
GWHAAZE00000001	exon	93712197	93712358	-
GWHAAZE00000001	exon	93712503	93712625	-
GWHAAZE00000001	exon	93712776	93712882	-
GWHAAZE00000001	CDS	93712776	93712882	-
GWHAAZE00000001	CDS	93712503	93712625	-
GWHAAZE00000001	CDS	93712197	93712358	-
GWHAAZE00000001	CDS	93711720	93712083	-

Transcript Sequence
>GWHTAAZE003202 ATGGATAGTCCATCCTTCCATGAATTCAAAAGGCAAGCTTCCTTCTTCTTCAAAGAAAAGATCAAAACTGCCCGTTTGGTCCTCACCGATGTTACACCTGCTCAACTATTGACAGAAGAAGCCACTGATGGAGATTCATGGGAACCGGACACTCATGCTTTGGGATTAATATCACATGCGGCTTTTGAAGTCGATGATTATTGGAGAATTGTTGATATTCTTCACAAAAGGTTGTGGAAGTTTGATGGGAAAAATTGGAGAGGGTCTTATAAGGCTCTAATAGTACTAGAAAACCTTTTAACTCATGGTCCACAAAGAGTTGCAGAGGAATTTCAATGTGACAGAGATATTATTAAGGAGATGGCTAATTTTCACTATGTTGATGATAAAGGATTCAACTGGGGATCGACTGTAAGAAAGAGGTCAGAGAAGATACTAAAGCTGCTGGAAGAAGAACAGAGGTCATTTCTCAAAGAAGAGCGAGCTAGAGCTCGTAAGATAACGAACGGGATCAAAGGATTTGGGAGCTTCTACCAGAGATCTTCTGGACTAGATGGAAACTTGAAAGAATCAACATACGTTAGATGTACCAGTTCTCATTTCACTGATCATCGAAATTACGAAGATGAATATTTGGATTCGAAAAACGAGATGAATGCAAACACAAGCGCTAGTTCAAGCATTGAAGATGATTATCACCCATTCTGCAAGGAGAAGCATCAGATCACTGGAGTTTCTCTGCTTTCTTCCATTTAG

Network for GWHGAAZE003196

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01417.21	ENTH	32	154	3.80E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12471	EPN	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.113
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.269
	SRR3591709	Stem	0.206
	SRR3591710	White floral bud	0.162
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.117
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.090
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.109
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.070
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.149
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.014
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.010
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.006
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.038
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.184
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.158
	CNS0095600	Silvery flower (diploied) 3	0.057
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.144
	CNS0095603	Golden flower (diploid) 3	0.329
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.090
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.110
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.127
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.050
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.095
	CNS0095610	Silvery flower (tetraploid) 1	0.067
	CNS0095611	Silvery flower (tetraploid) 2	0.135
	CNS0095612	Silvery flower (tetraploid) 3	0.312
	CNS0095613	Golden flower (tetraploid) 1	0.217
	CNS0095614	Golden flower (tetraploid) 2	0.032
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.043
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.034
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.009
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.030
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.105
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.488
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.300
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.250
	CRR073319	Tawny withering 2	0.058
	CRR073320	Tawny withering 3	0.000