Gene detail

Detail information of GWHGAAZE003194

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006435990.1	0	hypothetical protein CICLE_v10032183mg [Citrus clementina]
Swissprot	tr\|Q9M2U2\|ECR_ARATH	0	Very-long-chain enoyl-CoA reductase
trEMBL	tr\|V4TCE7\|V4TCE7_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR49230.1}
TAIR10	AT3G55360.1	4E-148	3-oxo-5-alpha-steroid 4-dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93698581	93702274	+
GWHAAZE00000001	mRNA	93698581	93702274	+
GWHAAZE00000001	exon	93698581	93698655	+
GWHAAZE00000001	exon	93698775	93698814	+
GWHAAZE00000001	exon	93700291	93701042	+
GWHAAZE00000001	exon	93701814	93702274	+
GWHAAZE00000001	five_prime_UTR	93698581	93698586	+
GWHAAZE00000001	CDS	93698587	93698655	+
GWHAAZE00000001	CDS	93698775	93698814	+
GWHAAZE00000001	CDS	93700291	93701042	+
GWHAAZE00000001	CDS	93701814	93701882	+
GWHAAZE00000001	three_prime_UTR	93701883	93702274	+

Transcript Sequence
>GWHTAAZE003200 GGGAAGATGAAGGTGACTGTCACTTCTCGGGGCGGCAAAGAGTTCATCAAGGGCGGCCTTGAGCTCAATGATTCGGCTACTGTTGCTGATCTGCAGGAGGCCATTTATAAGCGAACCAAGAAATACTATCCTTCAAGGCAGCGACTAACCCTCCCACTCCAACCTGGATCAAAAGAGAGGCCCACTGTTCTTCAGTACAAGAAAAATCTCAAAGAGTATACAGACGGAAATACAGACAGCTTAACTGTAGTGTTCAAGGACCTCGGCCCTCAAGTTTCCTATCGCACACTTTTCTTTTTTGAGTACTTGGGTCCTCTAATCATCTATCCCATCTTCTACTACTTGCCTGTATACCAGTACTTAGGCTACAAGGGCGAAAGAGTCATTCACCCTGTTCAAACCTATGCCATGTACTACTGGTGTTTTCACTACTTCAAACGTATAATGGAGACATTTTTCGTGCACCGTTTTAGCCATGCAACCTCACCACTTTCTAATGTATTTCGGAACTGTGCTTATTACTGGTCTTTTGGGGCTTATATTGCATACTATGTGAATCACCCCTTATACACACCTGTAAATGACCTTCAAATGAAGATCGGCTTTGGGCTTGGGTTGGTTTGTCAAATTGCAAATCTGTATTGTCATCTCTTACTGAGAAATCTTCGGGGCTCTGGGAATGGAGGCTACCAAATCCCACGTGGGTTTTTGTTCAACATTGTGACTTGTGCAAATTACACCACGGAGATTTATCAGTGGCTTGGGTTCAATATCGCCACACAGACTATTGCGGGTTACATCTTTCTTGTGGTTGCTGCTCTCATTATGACTAACTGGGCCTTAGCTAAACATCGCCGACTGAAGAGGCTGTTTGATGGCAAGGAGGGAAGACCCAAATATCCCCGACGATGGGTGATACTACCCCCATTCTTGTAGATGTGACCGGCACTCGTAGGCCCGTCTCTTTAGTAAGAAGTTTGGGATTCGGTGCTATGTTGTGAAGGTTTTTAGAGGTCCATTCTCATCAACACGATGTGCCAACACGGGATCTGATCTTTGCCTTTCCTTTGCTATTGTAGCTTTTATTTATTTATTAATTTGAAATGTAATTCAATTGCGGTAGTTTGGTCTTCTGTTTGTTCTTTCTATTAAAACTGTTTGGATAATCGTAAAGAGTTGTATCAGATTTGTTCTACAGTATTTTGATATGTTAAGTTACTGTTTTCAATATTTTCTCCTCAATGCCTTGAGGTCTTGCATTTGCCAATGTAGTGAATGTTTACGTTGATTGCTTTAGCAAATTAAACTTTAATGTGCAGTTCTTGGAA

Network for GWHGAAZE003194

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02544.17	Steroid_dh	159	308	9.90E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10258	TER, TSC13, CER10	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid elongation	map00062
		Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	95.937
	SRR3591706	second leaf	59.339
	SRR3591707	mature leaf	45.245
	SRR3591708	Shoot apex	82.440
	SRR3591709	Stem	60.940
	SRR3591710	White floral bud	80.579
	SRR3591711	White flower	33.551
	SRR3591712	Green floral bud	99.877
	SRR3591713	Yellow flower	31.005
SRP173429	SRR8316895	Juvenile bud stage	59.503
	SRR8316896	Juvenile bud stage	77.915
	SRR8316897	Juvenile bud stage	39.312
	SRR8316894	Third green stage	42.189
	SRR8316900	Third green stage	147.202
	SRR8316901	Third green stage	150.691
	SRR8316898	Complete white stage	51.568
	SRR8316899	Complete white stage	213.591
	SRR8316903	Complete white stage	85.475
	SRR8316902	Silver flowering stage	24.117
	SRR8316904	Silver flowering stage	35.587
	SRR8316905	Silver flowering stage	19.457
	SRR8316906	Gold flowering stage	54.500
	SRR8316907	Gold flowering stage	54.220
	SRR8316908	Gold flowering stage	49.355
SRP132670	SRR6706286	Control	152.438
	SRR6706287	Light intensity 50%	161.214
	SRR6706288	Light intensity 20%	177.219
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	79.972
	CNS0095593	Slightly white alabastrum(diploid) 2	87.822
	CNS0095594	Slightly white alabastrum(diploid) 3	66.585
	CNS0095595	Whole white alabastrum(diploid) 2	71.142
	CNS0095596	Whole white alabastrum(diploid) 3	77.084
	CNS0095597	Whole white alabastrum(diploid) 4	77.955
	CNS0095598	Silvery flower (diploied) 1	55.662
	CNS0095599	Silvery flower (diploied) 2	47.155
	CNS0095600	Silvery flower (diploied) 3	47.818
	CNS0095601	Golden flower (diploid) 1	38.696
	CNS0095602	Golden flower (diploid) 2	45.273
	CNS0095603	Golden flower (diploid) 3	44.898
	CNS0095604	Slightly white alabastrum(tetraploid) 1	96.783
	CNS0095605	Slightly white alabastrum(tetraploid) 2	80.026
	CNS0095606	Slightly white alabastrum(tetraploid) 3	168.368
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.908
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.662
	CNS0095609	Whole white alabastrum(tetraploid) 3	120.513
	CNS0095610	Silvery flower (tetraploid) 1	41.308
	CNS0095611	Silvery flower (tetraploid) 2	32.234
	CNS0095612	Silvery flower (tetraploid) 3	34.986
	CNS0095613	Golden flower (tetraploid) 1	24.398
	CNS0095614	Golden flower (tetraploid) 2	41.616
	CNS0095615	Golden flower (tetraploid) 3	25.631
CRA001975	CRR073297	Stem 1	80.062
	CRR073298	Stem 2	79.614
	CRR073299	Stem 3	79.412
	CRR073300	Leaf 1	130.428
	CRR073301	Leaf 2	129.909
	CRR073302	Leaf 3	127.261
	CRR073303	Juvenile bud 1	156.048
	CRR073304	Juvenile bud 2	169.374
	CRR073305	Juvenile bud 3	174.249
	CRR073306	Third green 1	33.805
	CRR073307	Third green 2	44.117
	CRR073308	Third green 3	37.718
	CRR073309	Second white 1	30.854
	CRR073310	Second white 2	16.570
	CRR073311	Second white 3	17.680
	CRR073312	Silver flowering 1	20.022
	CRR073313	Silver flowering 2	14.004
	CRR073314	Silver flowering 3	12.322
	CRR073315	Gold flowering 1	79.323
	CRR073316	Gold flowering 2	69.927
	CRR073317	Gold flowering 3	76.357
	CRR073318	Tawny withering 1	88.156
	CRR073319	Tawny withering 2	60.667
	CRR073320	Tawny withering 3	94.533