Detail information of GWHGAAZE003184


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00063.15.9101E-105unnamed protein product [Coffea canephora]
COGYP_003300526.12E-32enoyl-CoA hydratase/isomerase
trEMBLtr|A0A068TXH7|A0A068TXH7_COFCA2E-105Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313|EMBL:CDP00063.1}
TAIR10AT1G65520.16E-66delta(3), delta(2)-enoyl CoA isomerase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9346179193462519+
GWHAAZE00000001mRNA9346179193462519+
GWHAAZE00000001exon9346179193462519+
GWHAAZE00000001CDS9346179193462519+
Transcript Sequence

Network for GWHGAAZE003184

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00378.21ECH_1232011.00E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07517ECI1_2 Fatty acid degradation map00071

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.021
SRR3591706second leaf2.317
SRR3591707mature leaf1.768
SRR3591708Shoot apex15.386
SRR3591709Stem10.336
SRR3591710White floral bud8.026
SRR3591711White flower12.278
SRR3591712Green floral bud3.759
SRR3591713Yellow flower17.721
SRP173429 SRR8316895Juvenile bud stage 5.257
SRR8316896Juvenile bud stage 4.833
SRR8316897Juvenile bud stage 4.568
SRR8316894Third green stage 1.655
SRR8316900Third green stage 4.757
SRR8316901Third green stage 4.362
SRR8316898Complete white stage 6.888
SRR8316899Complete white stage 11.826
SRR8316903Complete white stage 8.132
SRR8316902Silver flowering stage14.685
SRR8316904Silver flowering stage19.360
SRR8316905Silver flowering stage9.910
SRR8316906Gold flowering stage 36.514
SRR8316907Gold flowering stage 47.614
SRR8316908Gold flowering stage 50.548
SRP132670SRR6706286Control11.688
SRR6706287Light intensity 50%9.558
SRR6706288Light intensity 20%8.114
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.100
CNS0095593Slightly white alabastrum(diploid) 29.230
CNS0095594Slightly white alabastrum(diploid) 37.700
CNS0095595Whole white alabastrum(diploid) 25.078
CNS0095596Whole white alabastrum(diploid) 32.727
CNS0095597Whole white alabastrum(diploid) 45.442
CNS0095598Silvery flower (diploied) 113.893
CNS0095599Silvery flower (diploied) 214.408
CNS0095600Silvery flower (diploied) 323.625
CNS0095601Golden flower (diploid) 120.194
CNS0095602Golden flower (diploid) 225.055
CNS0095603Golden flower (diploid) 328.755
CNS0095604Slightly white alabastrum(tetraploid) 12.658
CNS0095605Slightly white alabastrum(tetraploid) 22.171
CNS0095606Slightly white alabastrum(tetraploid) 34.823
CNS0095607Whole white alabastrum(tetraploid) 12.518
CNS0095608Whole white alabastrum(tetraploid) 23.224
CNS0095609Whole white alabastrum(tetraploid) 34.411
CNS0095610Silvery flower (tetraploid) 124.336
CNS0095611Silvery flower (tetraploid) 224.659
CNS0095612Silvery flower (tetraploid) 338.399
CNS0095613Golden flower (tetraploid) 128.241
CNS0095614Golden flower (tetraploid) 232.024
CNS0095615Golden flower (tetraploid) 328.094
CRA001975CRR073297Stem 14.997
CRR073298Stem 25.185
CRR073299Stem 36.753
CRR073300Leaf 16.533
CRR073301Leaf 25.075
CRR073302Leaf 36.768
CRR073303Juvenile bud 16.754
CRR073304Juvenile bud 27.384
CRR073305Juvenile bud 39.777
CRR073306Third green 150.578
CRR073307Third green 248.290
CRR073308Third green 339.475
CRR073309Second white 146.389
CRR073310Second white 240.738
CRR073311Second white 328.924
CRR073312Silver flowering 126.428
CRR073313Silver flowering 232.971
CRR073314Silver flowering 329.914
CRR073315Gold flowering 13.330
CRR073316Gold flowering 24.945
CRR073317Gold flowering 36.145
CRR073318Tawny withering 125.948
CRR073319Tawny withering 249.286
CRR073320Tawny withering 319.873