Detail information of GWHGAAZE003172


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003552674.16.89887E-31PREDICTED: 60S ribosomal protein L23a-1-like isoform X1 [Glycine max]
Swissprottr|O22644|RL23A_FRIAG2E-3060S ribosomal protein L23A
trEMBLtr|I1N527|I1N527_SOYBN3E-31Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G52310.1}
TAIR10AT3G55280.33E-12ribosomal protein L23AB

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9327868593279482+
GWHAAZE00000001mRNA9327868593279482+
GWHAAZE00000001exon9327868593278869+
GWHAAZE00000001exon9327909293279482+
GWHAAZE00000001CDS9327868593278869+
GWHAAZE00000001CDS9327909293279206+
GWHAAZE00000001three_prime_UTR9327920793279482+
Transcript Sequence

Network for GWHGAAZE003172

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03939.14Ribosomal_L23eN9501.90E-05
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02893RP-L23Ae, RPL23A Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.936
SRR3591706second leaf4.944
SRR3591707mature leaf4.347
SRR3591708Shoot apex4.319
SRR3591709Stem1.311
SRR3591710White floral bud2.689
SRR3591711White flower2.575
SRR3591712Green floral bud2.643
SRR3591713Yellow flower2.163
SRP173429 SRR8316895Juvenile bud stage 2.308
SRR8316896Juvenile bud stage 5.852
SRR8316897Juvenile bud stage 1.311
SRR8316894Third green stage 1.244
SRR8316900Third green stage 2.921
SRR8316901Third green stage 2.263
SRR8316898Complete white stage 0.822
SRR8316899Complete white stage 2.330
SRR8316903Complete white stage 1.125
SRR8316902Silver flowering stage0.597
SRR8316904Silver flowering stage0.207
SRR8316905Silver flowering stage0.154
SRR8316906Gold flowering stage 0.668
SRR8316907Gold flowering stage 0.452
SRR8316908Gold flowering stage 0.297
SRP132670SRR6706286Control2.281
SRR6706287Light intensity 50%2.676
SRR6706288Light intensity 20%2.541
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.933
CNS0095593Slightly white alabastrum(diploid) 25.013
CNS0095594Slightly white alabastrum(diploid) 34.962
CNS0095595Whole white alabastrum(diploid) 23.847
CNS0095596Whole white alabastrum(diploid) 34.403
CNS0095597Whole white alabastrum(diploid) 43.124
CNS0095598Silvery flower (diploied) 12.240
CNS0095599Silvery flower (diploied) 20.629
CNS0095600Silvery flower (diploied) 30.684
CNS0095601Golden flower (diploid) 11.201
CNS0095602Golden flower (diploid) 21.457
CNS0095603Golden flower (diploid) 30.482
CNS0095604Slightly white alabastrum(tetraploid) 11.701
CNS0095605Slightly white alabastrum(tetraploid) 22.129
CNS0095606Slightly white alabastrum(tetraploid) 30.804
CNS0095607Whole white alabastrum(tetraploid) 10.905
CNS0095608Whole white alabastrum(tetraploid) 20.948
CNS0095609Whole white alabastrum(tetraploid) 31.141
CNS0095610Silvery flower (tetraploid) 10.099
CNS0095611Silvery flower (tetraploid) 20.765
CNS0095612Silvery flower (tetraploid) 30.079
CNS0095613Golden flower (tetraploid) 10.330
CNS0095614Golden flower (tetraploid) 20.205
CNS0095615Golden flower (tetraploid) 30.060
CRA001975CRR073297Stem 13.770
CRR073298Stem 23.394
CRR073299Stem 33.631
CRR073300Leaf 12.313
CRR073301Leaf 22.604
CRR073302Leaf 33.731
CRR073303Juvenile bud 12.504
CRR073304Juvenile bud 20.550
CRR073305Juvenile bud 30.776
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.512
CRR073309Second white 10.000
CRR073310Second white 20.004
CRR073311Second white 30.058
CRR073312Silver flowering 10.304
CRR073313Silver flowering 20.007
CRR073314Silver flowering 30.000
CRR073315Gold flowering 15.004
CRR073316Gold flowering 23.440
CRR073317Gold flowering 33.513
CRR073318Tawny withering 11.909
CRR073319Tawny withering 21.603
CRR073320Tawny withering 32.495