Gene detail

Detail information of GWHGAAZE003169

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282535.1	0	PREDICTED: beta-hexosaminidase 1 [Vitis vinifera]
COG	YP_824350.1	8E-71	beta-N-acetylhexosaminidase
Swissprot	tr\|A7WM73\|HEXO1_ARATH	0	Beta-hexosaminidase 1 (Precursor)
trEMBL	tr\|D7TM08\|D7TM08_VITVI	0	Beta-hexosaminidase {ECO:0000256\|PIRNR:PIRNR001093}
TAIR10	AT3G55260.1	0	beta-hexosaminidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93172193	93185964	+
GWHAAZE00000001	mRNA	93172193	93185964	+
GWHAAZE00000001	exon	93172193	93172234	+
GWHAAZE00000001	exon	93173688	93173760	+
GWHAAZE00000001	exon	93178115	93178413	+
GWHAAZE00000001	exon	93178514	93178597	+
GWHAAZE00000001	exon	93179293	93179328	+
GWHAAZE00000001	exon	93180458	93180569	+
GWHAAZE00000001	exon	93180677	93180747	+
GWHAAZE00000001	exon	93180880	93181010	+
GWHAAZE00000001	exon	93181346	93181362	+
GWHAAZE00000001	exon	93181898	93181946	+
GWHAAZE00000001	exon	93182162	93182262	+
GWHAAZE00000001	exon	93182826	93182885	+
GWHAAZE00000001	exon	93183825	93183858	+
GWHAAZE00000001	exon	93184498	93184596	+
GWHAAZE00000001	exon	93184951	93185010	+
GWHAAZE00000001	exon	93185098	93185348	+
GWHAAZE00000001	exon	93185632	93185964	+
GWHAAZE00000001	CDS	93172193	93172234	+
GWHAAZE00000001	CDS	93173688	93173760	+
GWHAAZE00000001	CDS	93178115	93178413	+
GWHAAZE00000001	CDS	93178514	93178597	+
GWHAAZE00000001	CDS	93179293	93179328	+
GWHAAZE00000001	CDS	93180458	93180569	+
GWHAAZE00000001	CDS	93180677	93180747	+
GWHAAZE00000001	CDS	93180880	93181010	+
GWHAAZE00000001	CDS	93181346	93181362	+
GWHAAZE00000001	CDS	93181898	93181946	+
GWHAAZE00000001	CDS	93182162	93182262	+
GWHAAZE00000001	CDS	93182826	93182885	+
GWHAAZE00000001	CDS	93183825	93183858	+
GWHAAZE00000001	CDS	93184498	93184596	+
GWHAAZE00000001	CDS	93184951	93185010	+
GWHAAZE00000001	CDS	93185098	93185348	+
GWHAAZE00000001	CDS	93185632	93185807	+
GWHAAZE00000001	three_prime_UTR	93185808	93185964	+

Transcript Sequence
>GWHTAAZE003175 ATGGTTATGGCTATGGATATGGCTTTAAAATTGAGATTTATGATAGAGTCGTTCTTCTTTAACATGGACAGAAGCATTGCTACGAAGAGCGGTGCGCCATTAATTGGTGTTAAGATCTACTCTCGAATTATTCGTCTCAGTCCAATCTCAGAACTGGATGAATCTCTTGTTTATCTGTGGCCTTTGCCTTCAGATTTCACTTTCGGCACCACAACGCTATCAGTCGACCCCGATCTCTCTCTGACAGTCGGCGGCAATGGCGGCACCTCCGTCATAGTTAGCCAAGCTTTTGAGAGGTATAAAACAATTATATTCAAGCATAGCAGCTCTAAGTATTTCAAATTTGGAGTTAGGACCCAGGACAAGTATGATATTAGCGGTGTTAGTATTGTTGTGCAATCTGCCGAGGAAAAGCTTCAACTTGGTGTGGACGAGAGCTATTCTTTGTTGGTTCCGAAGAATGATGGCCTTTCCATCATTGGCAAAGTCACCATCGAGGCAAACACTGTCTATGGTGCATTGCGTGGATTGGAGACCTTTAGCCAATTATGCACCTTTGATTATGGAAGTAAAACTGTGCAAGTATACAAGGCCCCATGGTTCATCAAAGACAAACCTAGATTTGTATATCGGGGGCTTATGCTTGATACATCGAGGCACTATTTACCAGTTGATATAATTAAGCAAGTGATTGAATCCATGTCATATGCTAAACTTAATGTCCTTCATTGGCACATCATAGACGAGCAGTCATTTCCTCTAGAAGTTCCTACATATCCAAAATTGTGGAAAGGGGCATATACAAAGTGGGAGCGCTACACTATTGAGGATGCATATGAAATAGTCAACTTTGCCAAAGTCAGAGGTATCAATGTTATGGCAGAAATAGACATTCCTGGTCATGCTGAGTCATGGGGTGCCGGATATCCTGATCTTTGGCCTTCGCCTTCTTGTAGAGAGCCCCTGGATGTTTCAAAAAACTTTACTTTTGATGTGCTTTCAGGCATTCTGACTGACATGAGGAAAATTTTTCCATTCGAGCTCTTCCACTTGGGTGGTGATGAGGTCAATACAGATTGCTGGAGCTCTACTCCCCATGTGAAGCAATGGCTTCAAGAGCACAACATGAATCCTAAAGATGCATATCAATATTTTGTACTCCGAGCTCAAGAAATAGCAATTTCAAAAGATTGGACCCCTGTCAACTGGGAAGAGACCTTCAACACATTTGCAGCAAAACTCAATCCGCAAACTGTGGTGCATAACTGGTTGGGCCCTGGAGTTTGTCCCAAGGCTGTTGCAAAAGGGTTTAGGTGCATTTATAGCAATCAAGGTGTTTGGTATCTAGACCACTTAGATGTCCCTTGGGATGATTTCTATAATGCTGAGCCCCTAGAAGGAATAACCGATGCTTCTCAGCAAGAACTTGTGCTCGGAGGAGAAGTTTGCATGTGGAGTGAAACAGCTGATCCCTCAAATGTTCTGCAAACAATATGGCCTCGAGCTGCAGCAGCTGCAGAGCGTTTATGGAGCACGAGGGAGGCTGGTTCAACAGGAAACACCACCTCAAGTGCACTACCCAGGCTACAATACTTCAGGTGCCTGCTAACCAGGCGTGGTGTTCCAGCTGCACCAGTTACAAATAAGTATGCGAGAAGCCCGCCAATTGGTCCAGGGTCATGTTACGATCAATAATGAATCCGTTTGTGTTGTTTGAGTAATAATATTATACATTTGATCCTGTGCTTTGTAAATAATTATACGTTCTTCAGGATTTCCAGTGTTTGCTTGGTGTGCAGTTGTTAGAAAGATCGGATTGACTTTATTCAATGTGCAGATGAAGTCAAAAATA

Network for GWHGAAZE003169

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14845.7	Glycohydro_20b2	59	183	4.60E-23
PF00728.23	Glyco_hydro_20	208	512	4.40E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12373	HEXA_B	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		Various types of N-glycan biosynthesis	map00513
		Glycosaminoglycan degradation	map00531
		Glycosphingolipid biosynthesis - globo and isoglobo series	map00603
		Glycosphingolipid biosynthesis - ganglio series	map00604
		Other glycan degradation	map00511
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563	molecular_function	beta-N-acetylhexosaminidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.934
	SRR3591706	second leaf	24.632
	SRR3591707	mature leaf	21.935
	SRR3591708	Shoot apex	38.071
	SRR3591709	Stem	86.405
	SRR3591710	White floral bud	31.816
	SRR3591711	White flower	28.683
	SRR3591712	Green floral bud	39.857
	SRR3591713	Yellow flower	25.347
SRP173429	SRR8316895	Juvenile bud stage	22.996
	SRR8316896	Juvenile bud stage	31.310
	SRR8316897	Juvenile bud stage	13.939
	SRR8316894	Third green stage	13.488
	SRR8316900	Third green stage	35.935
	SRR8316901	Third green stage	33.795
	SRR8316898	Complete white stage	13.597
	SRR8316899	Complete white stage	56.748
	SRR8316903	Complete white stage	25.656
	SRR8316902	Silver flowering stage	9.036
	SRR8316904	Silver flowering stage	12.740
	SRR8316905	Silver flowering stage	5.949
	SRR8316906	Gold flowering stage	21.930
	SRR8316907	Gold flowering stage	22.938
	SRR8316908	Gold flowering stage	24.301
SRP132670	SRR6706286	Control	49.283
	SRR6706287	Light intensity 50%	46.638
	SRR6706288	Light intensity 20%	44.942
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.814
	CNS0095593	Slightly white alabastrum(diploid) 2	28.861
	CNS0095594	Slightly white alabastrum(diploid) 3	28.360
	CNS0095595	Whole white alabastrum(diploid) 2	22.329
	CNS0095596	Whole white alabastrum(diploid) 3	20.568
	CNS0095597	Whole white alabastrum(diploid) 4	23.168
	CNS0095598	Silvery flower (diploied) 1	30.563
	CNS0095599	Silvery flower (diploied) 2	31.245
	CNS0095600	Silvery flower (diploied) 3	36.307
	CNS0095601	Golden flower (diploid) 1	32.302
	CNS0095602	Golden flower (diploid) 2	41.960
	CNS0095603	Golden flower (diploid) 3	41.857
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.499
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.583
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.067
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.871
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.250
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.068
	CNS0095610	Silvery flower (tetraploid) 1	27.610
	CNS0095611	Silvery flower (tetraploid) 2	35.189
	CNS0095612	Silvery flower (tetraploid) 3	26.881
	CNS0095613	Golden flower (tetraploid) 1	16.261
	CNS0095614	Golden flower (tetraploid) 2	27.328
	CNS0095615	Golden flower (tetraploid) 3	19.115
CRA001975	CRR073297	Stem 1	24.148
	CRR073298	Stem 2	24.375
	CRR073299	Stem 3	24.791
	CRR073300	Leaf 1	30.656
	CRR073301	Leaf 2	23.702
	CRR073302	Leaf 3	26.305
	CRR073303	Juvenile bud 1	34.426
	CRR073304	Juvenile bud 2	24.623
	CRR073305	Juvenile bud 3	43.067
	CRR073306	Third green 1	10.692
	CRR073307	Third green 2	11.348
	CRR073308	Third green 3	10.928
	CRR073309	Second white 1	15.176
	CRR073310	Second white 2	9.411
	CRR073311	Second white 3	9.690
	CRR073312	Silver flowering 1	8.375
	CRR073313	Silver flowering 2	12.323
	CRR073314	Silver flowering 3	9.336
	CRR073315	Gold flowering 1	10.803
	CRR073316	Gold flowering 2	12.673
	CRR073317	Gold flowering 3	14.269
	CRR073318	Tawny withering 1	39.754
	CRR073319	Tawny withering 2	30.179
	CRR073320	Tawny withering 3	42.456