Detail information of GWHGAAZE003158


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275798.30PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Vitis vinifera]
trEMBLtr|D7T479|D7T479_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI25311.3}
TAIR10AT1G28060.10Pre-mRNA-splicing factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9297487492979595-
GWHAAZE00000001mRNA9297487492979595-
GWHAAZE00000001exon9297920092979595-
GWHAAZE00000001exon9297781592978099-
GWHAAZE00000001exon9297724392977701-
GWHAAZE00000001exon9297678192976975-
GWHAAZE00000001exon9297652992976689-
GWHAAZE00000001exon9297487492975753-
GWHAAZE00000001CDS9297920092979595-
GWHAAZE00000001CDS9297781592978099-
GWHAAZE00000001CDS9297724392977701-
GWHAAZE00000001CDS9297678192976975-
GWHAAZE00000001CDS9297652992976689-
GWHAAZE00000001CDS9297487492975753-
Transcript Sequence

Network for GWHGAAZE003158

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08572.11PRP34056345.00E-61
PF06544.13DUF11156597822.30E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12843PRPF3, PRP3 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.904
SRR3591706second leaf23.546
SRR3591707mature leaf24.783
SRR3591708Shoot apex29.482
SRR3591709Stem33.889
SRR3591710White floral bud38.629
SRR3591711White flower41.654
SRR3591712Green floral bud29.521
SRR3591713Yellow flower34.530
SRP173429 SRR8316895Juvenile bud stage 23.992
SRR8316896Juvenile bud stage 34.211
SRR8316897Juvenile bud stage 12.992
SRR8316894Third green stage 12.590
SRR8316900Third green stage 30.641
SRR8316901Third green stage 30.200
SRR8316898Complete white stage 10.150
SRR8316899Complete white stage 35.078
SRR8316903Complete white stage 25.168
SRR8316902Silver flowering stage13.086
SRR8316904Silver flowering stage20.945
SRR8316905Silver flowering stage11.527
SRR8316906Gold flowering stage 27.469
SRR8316907Gold flowering stage 28.849
SRR8316908Gold flowering stage 32.351
SRP132670SRR6706286Control43.848
SRR6706287Light intensity 50%39.907
SRR6706288Light intensity 20%39.130
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.493
CNS0095593Slightly white alabastrum(diploid) 220.263
CNS0095594Slightly white alabastrum(diploid) 319.673
CNS0095595Whole white alabastrum(diploid) 218.095
CNS0095596Whole white alabastrum(diploid) 315.102
CNS0095597Whole white alabastrum(diploid) 414.549
CNS0095598Silvery flower (diploied) 135.472
CNS0095599Silvery flower (diploied) 238.382
CNS0095600Silvery flower (diploied) 344.871
CNS0095601Golden flower (diploid) 133.792
CNS0095602Golden flower (diploid) 251.072
CNS0095603Golden flower (diploid) 350.902
CNS0095604Slightly white alabastrum(tetraploid) 118.834
CNS0095605Slightly white alabastrum(tetraploid) 216.581
CNS0095606Slightly white alabastrum(tetraploid) 337.948
CNS0095607Whole white alabastrum(tetraploid) 113.320
CNS0095608Whole white alabastrum(tetraploid) 210.375
CNS0095609Whole white alabastrum(tetraploid) 323.537
CNS0095610Silvery flower (tetraploid) 132.631
CNS0095611Silvery flower (tetraploid) 236.419
CNS0095612Silvery flower (tetraploid) 330.198
CNS0095613Golden flower (tetraploid) 121.624
CNS0095614Golden flower (tetraploid) 236.216
CNS0095615Golden flower (tetraploid) 346.490
CRA001975CRR073297Stem 153.786
CRR073298Stem 254.472
CRR073299Stem 346.124
CRR073300Leaf 151.563
CRR073301Leaf 246.768
CRR073302Leaf 335.200
CRR073303Juvenile bud 137.539
CRR073304Juvenile bud 229.751
CRR073305Juvenile bud 355.356
CRR073306Third green 130.897
CRR073307Third green 221.349
CRR073308Third green 332.063
CRR073309Second white 116.080
CRR073310Second white 220.036
CRR073311Second white 318.925
CRR073312Silver flowering 119.661
CRR073313Silver flowering 221.318
CRR073314Silver flowering 318.620
CRR073315Gold flowering 118.661
CRR073316Gold flowering 229.424
CRR073317Gold flowering 316.036
CRR073318Tawny withering 145.921
CRR073319Tawny withering 235.020
CRR073320Tawny withering 336.653