Gene detail

Detail information of GWHGAAZE003154

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00008.1	2.9368E-110	unnamed protein product [Coffea canephora]
COG	YP_001938945.1	0.000000006	RNA-binding protein (RRM domain)
Swissprot	tr\|Q9FYB7\|RSZ32_ARATH	4E-78	Serine/arginine-rich splicing factor RS2Z32
trEMBL	tr\|A0A068TXB9\|A0A068TXB9_COFCA	1E-110	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDP00008.1}
TAIR10	AT2G37340.1	2E-51	arginine/serine-rich zinc knuckle-containing protein 33

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92902407	92906769	-
GWHAAZE00000001	mRNA	92902407	92906769	-
GWHAAZE00000001	exon	92902407	92902764	-
GWHAAZE00000001	exon	92903987	92904070	-
GWHAAZE00000001	exon	92904210	92904406	-
GWHAAZE00000001	exon	92905648	92905743	-
GWHAAZE00000001	exon	92905879	92905918	-
GWHAAZE00000001	exon	92906663	92906769	-
GWHAAZE00000001	CDS	92906663	92906769	-
GWHAAZE00000001	CDS	92905879	92905918	-
GWHAAZE00000001	CDS	92905648	92905743	-
GWHAAZE00000001	CDS	92904210	92904406	-
GWHAAZE00000001	CDS	92903987	92904070	-
GWHAAZE00000001	CDS	92902407	92902764	-

Transcript Sequence
>GWHTAAZE003160 ATGCCACGTTATGAAGATCGCCAGGGTACTACACGCCTCTATGTTGGTCACTTATCTTCTCGGACACGATCACGCGACTTAGAGGATGTATTTAGCAGATATGGAAGAGTACGTGATGTGGATATGAAGCGTGACTTTGCCTTTGTGGATTTTAGTGACTCTCGAGATGCTGATGATGCAAGACATAGCTTGAATGGTAGAGAAGTTGATGGAAGTCGAATCATTGTGGAATTTGCGAAGGGGGGACAGCGTGGACCAGGTGGGTCTCGTGATTATCTTGGCAGAGGTCCTGCTCCGGGATCAGGGCGCTGCTTTAACTGTGGAATTGATGGCCATTGGGCTCGAGATTGCAAAGATGGGGACTGGAAGAACAAGTGTTACCGATGTGGGGACCGAGGTCATATAGAGAAGAACTGTCAGAACAGTCCCAAGAAAATTACACATGGGCGGAGTTATTCGCGGTCACCACCTCCTCGACGTGGCAGAAGCCCAAGCCGTAGTTACAGCAGGAGTAGAAGCTACAGCCGATCTAGGTCACCCCCAAAGAGGGAGCGTAGAATTGAGCACACCGAGAGAAGATCAAGGAGCCCAAGACGACGCAGGTCTTCACCACCACCACCATCAAAAGGGAGGAGGAACCACAGCCCATCACCTGATGAAAGAGGCACCACCCCATCCCCGAGGAATGGCAGAAAACTCAATGGGCGCTCCAACTCAAGGAGCAGGAGCCCCATGGATGATGATGCTCAAAGAGAGACCACCAAGGTCACTGAAGAAAATGGCCGCAGCCCCAGTCCTAGCCCCATCCATAGGGACAATGCAAGCCCTATTGGTGACCACAATGAGGACCGTGGCTCTCCTAGGGCCAGCGTATCAGTTTAA

Network for GWHGAAZE003154

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	13	74	8.60E-15
PF00098.24	zf-CCHC	103	118	2.30E-06
PF00098.24	zf-CCHC	124	140	0.001

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12896	SFRS7	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	87.174
	SRR3591706	second leaf	53.137
	SRR3591707	mature leaf	50.073
	SRR3591708	Shoot apex	92.684
	SRR3591709	Stem	71.641
	SRR3591710	White floral bud	64.265
	SRR3591711	White flower	61.239
	SRR3591712	Green floral bud	74.550
	SRR3591713	Yellow flower	57.447
SRP173429	SRR8316895	Juvenile bud stage	61.507
	SRR8316896	Juvenile bud stage	79.630
	SRR8316897	Juvenile bud stage	31.030
	SRR8316894	Third green stage	32.164
	SRR8316900	Third green stage	85.543
	SRR8316901	Third green stage	97.074
	SRR8316898	Complete white stage	37.246
	SRR8316899	Complete white stage	120.054
	SRR8316903	Complete white stage	70.028
	SRR8316902	Silver flowering stage	32.733
	SRR8316904	Silver flowering stage	34.956
	SRR8316905	Silver flowering stage	22.579
	SRR8316906	Gold flowering stage	61.523
	SRR8316907	Gold flowering stage	74.974
	SRR8316908	Gold flowering stage	67.402
SRP132670	SRR6706286	Control	120.958
	SRR6706287	Light intensity 50%	113.798
	SRR6706288	Light intensity 20%	117.854
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	73.669
	CNS0095593	Slightly white alabastrum(diploid) 2	75.101
	CNS0095594	Slightly white alabastrum(diploid) 3	70.635
	CNS0095595	Whole white alabastrum(diploid) 2	52.294
	CNS0095596	Whole white alabastrum(diploid) 3	60.238
	CNS0095597	Whole white alabastrum(diploid) 4	47.250
	CNS0095598	Silvery flower (diploied) 1	59.550
	CNS0095599	Silvery flower (diploied) 2	49.949
	CNS0095600	Silvery flower (diploied) 3	56.081
	CNS0095601	Golden flower (diploid) 1	62.415
	CNS0095602	Golden flower (diploid) 2	51.487
	CNS0095603	Golden flower (diploid) 3	54.410
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.241
	CNS0095605	Slightly white alabastrum(tetraploid) 2	59.797
	CNS0095606	Slightly white alabastrum(tetraploid) 3	106.783
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.706
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.181
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.010
	CNS0095610	Silvery flower (tetraploid) 1	52.829
	CNS0095611	Silvery flower (tetraploid) 2	47.823
	CNS0095612	Silvery flower (tetraploid) 3	39.632
	CNS0095613	Golden flower (tetraploid) 1	38.811
	CNS0095614	Golden flower (tetraploid) 2	53.353
	CNS0095615	Golden flower (tetraploid) 3	41.576
CRA001975	CRR073297	Stem 1	103.960
	CRR073298	Stem 2	99.632
	CRR073299	Stem 3	95.691
	CRR073300	Leaf 1	104.549
	CRR073301	Leaf 2	109.440
	CRR073302	Leaf 3	77.877
	CRR073303	Juvenile bud 1	77.898
	CRR073304	Juvenile bud 2	57.355
	CRR073305	Juvenile bud 3	94.476
	CRR073306	Third green 1	27.620
	CRR073307	Third green 2	26.105
	CRR073308	Third green 3	27.610
	CRR073309	Second white 1	16.894
	CRR073310	Second white 2	16.523
	CRR073311	Second white 3	14.780
	CRR073312	Silver flowering 1	13.579
	CRR073313	Silver flowering 2	19.960
	CRR073314	Silver flowering 3	18.393
	CRR073315	Gold flowering 1	30.699
	CRR073316	Gold flowering 2	47.205
	CRR073317	Gold flowering 3	39.627
	CRR073318	Tawny withering 1	73.672
	CRR073319	Tawny withering 2	63.321
	CRR073320	Tawny withering 3	70.583