Gene detail

Detail information of GWHGAAZE003146

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04335.1	0	unnamed protein product [Coffea canephora]
COG	YP_004656894.1	0.000000001	response regulator receiver protein
Swissprot	tr\|A2XFB7\|PRR73_ORYSI	4E-145	Two-component response regulator-like PRR73
trEMBL	tr\|A0A068U724\|A0A068U724_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04335.1}
TAIR10	AT5G02810.1	8E-100	pseudo-response regulator 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92818287	92822996	+
GWHAAZE00000001	mRNA	92818287	92822996	+
GWHAAZE00000001	exon	92818287	92818512	+
GWHAAZE00000001	exon	92818633	92818766	+
GWHAAZE00000001	exon	92819004	92819168	+
GWHAAZE00000001	exon	92820171	92820345	+
GWHAAZE00000001	exon	92820465	92820718	+
GWHAAZE00000001	exon	92820805	92820884	+
GWHAAZE00000001	exon	92821416	92822196	+
GWHAAZE00000001	exon	92822733	92822801	+
GWHAAZE00000001	exon	92822901	92822996	+
GWHAAZE00000001	CDS	92818287	92818512	+
GWHAAZE00000001	CDS	92818633	92818766	+
GWHAAZE00000001	CDS	92819004	92819168	+
GWHAAZE00000001	CDS	92820171	92820345	+
GWHAAZE00000001	CDS	92820465	92820718	+
GWHAAZE00000001	CDS	92820805	92820884	+
GWHAAZE00000001	CDS	92821416	92822196	+
GWHAAZE00000001	CDS	92822733	92822801	+
GWHAAZE00000001	CDS	92822901	92822996	+

Transcript Sequence
>GWHTAAZE003152 ATGGCAATTTTTTTCTTTTTTGTGGTATTATTCCTTGACCAATATATGAACTATTTCGTCACAGTTGTGGCAGTGGCAAATGGTCTAGAAGCATGGAGAATCATAGAAGATCTAAACAATCACATTGATCTCGTTTTAACCGAGGTGGTCATGCCTTGTTTAACGGGGGTTGCTCTCCTATCAATGATTAAGAGCCACAAAACTTGCAAAAACATTCCCGTTATTATGATGTCATCGAATGATTCTATGGGTATAGTCTTTAAGTGTTTGTCAAAAGGTGCAGTTGACTTTCTAGTGAAGCCGATAAGAAAAAATGAGCTTAAAAACCTCTGGCAGCATGTGTGGAGGAAATGCCACAGTTCTAGCGGTAGTGCAAGTGAAAGTGGTATACGGACTCAAAAATCCACAAAGTCAAAAAGTGTTGAGGGGTCAGAAAACAATAGTGGAAGCAATGAGGATGAGGATGACTATGGGAGCATTGGTTTGAATGCTAAGGATGGAAGTGACAACGGAAGTGGCACACAGACTTCTTGGTCAAAAAAGGTAGTAGAAGTTGACAGCCCGCAACCAATGTCACCGTGTAACCAATTTGCTGATCCTCCGGAAAGCACTTGTGCCCGGGTTGTTCATTCAAGGCCTGAAGCAATTAGCAAAAACTGGGTACCTAGAACTGACTGCCACAGAGAGGATGATGAACTTGACAGTTTTGCGATGGGTAAAGACTTGGAGATAGGAGTCCCTAGAAACTCAGATTTACATCTTGAAGACCCAAACAAACATAAAGATAAAATTTTCGATTTAAACTCGAAGAAAGATGTCGAAAAATTAGGAAACGTAAGGGCGGAGCTCATCAGTGAGGTGGCAAATGGTGAGAGGAGCAACGAAGCTGTTGATCTTTTGGGTAGCGTTACCAACAACAACTATAAGTCTCAGATGAAATGTGTAGCCAATGAATTTGAAGAGGCAGAGAGACGAGGGACCACTTGTCAAGAGCTAAACGCTTTGAGGCATTCGGACCTTTCAGCATTCTCTAGGTATAACACCTCTTCAAATAACAATCAAACTCCAACTGGGAATGTTGGCAGCTGCTCTCCACTTGATAACAGCTTAGAAGGCGCAAAGACCGAGTCAACACCAAATTTGCAATCCAAGTCAAATGGCACTCCAAATCAACGTTCAAACGGCAGTAGTAACGATGACATGGGCTCAACAACAAACAACGTTGTTACAAAGCCAGAGGCATTCACTGATAAGCCAATGCCCAAGTCAACAGTAAATATCCATCCCTGTTCTGCATTTCAACCAGTGCAACAACAAGGCCACACTTCTGCCCTTCAGCCTGAAAAGGGTGATGCTGAAACATCTAAGGTCCAAGTCCAGCACCACCACCACCATTACCACCACCACCACCACCATGTACATAACATGCAGCAGCAGCAGGTTAACAGCCATGAGGACTTGTCTTTGCAAAAGAAAGTTGGATCAGCTTCACATTGTGGGCCATCAAATGTCATGAATGGATCAATTGAAGGAAATGCTGCCAACTACAGTTTGAATGGAAGCACATCGGGAAGTAACAAAAGAAGCGGTGGGGTGAATGGCAGCAGTGGGCAAAATGGCAGTTGCAGTGCTGCAATGGCTGAAGGAATGCAAATGGCAAGTGATAATGGAGGCACTGCAAAATGTGGAGCTGATGATGGAAGTGGAAGTGGTAGTGGAAGCAGGAGTGGGGTAGATCAAAACCGGTTGGCACAGAGAGAGGCCGCTTTAAACAAATTTCGACAGAAGAGGAAAGATAGATGCTTTGAAAAAAAGGTCAGATACCAAAGCAGGAAAACACTGGCAGAACAAAAACCACGCGTGCGTGGACAATTTGTGCGAAAGATTAGCTGTAATTGTGTAGATAGAGAGCGGAAGCACAATCTTCCATGGGATGTGGCGAAGGATATGGTAGAACTGAAGACCAATTTCACTGAGTGA

Network for GWHGAAZE003146

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0024	Transcription factor Pseudo ARR-B family Transcription factor Pseudo ARR-B GO:0000160 phosphorelay signal transduction system GOslim:biological_process map04712 Circadian rhythm - plant

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	20	109	6.00E-17
PF06203.15	CCT	586	628	3.50E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Pseudo ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
K12129	PRR7	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.041
	SRR3591706	second leaf	71.768
	SRR3591707	mature leaf	71.987
	SRR3591708	Shoot apex	86.817
	SRR3591709	Stem	92.861
	SRR3591710	White floral bud	71.674
	SRR3591711	White flower	71.069
	SRR3591712	Green floral bud	63.176
	SRR3591713	Yellow flower	68.362
SRP173429	SRR8316895	Juvenile bud stage	50.490
	SRR8316896	Juvenile bud stage	52.906
	SRR8316897	Juvenile bud stage	29.140
	SRR8316894	Third green stage	24.591
	SRR8316900	Third green stage	58.947
	SRR8316901	Third green stage	55.693
	SRR8316898	Complete white stage	23.948
	SRR8316899	Complete white stage	80.145
	SRR8316903	Complete white stage	54.183
	SRR8316902	Silver flowering stage	29.476
	SRR8316904	Silver flowering stage	47.090
	SRR8316905	Silver flowering stage	22.349
	SRR8316906	Gold flowering stage	61.561
	SRR8316907	Gold flowering stage	61.621
	SRR8316908	Gold flowering stage	56.751
SRP132670	SRR6706286	Control	78.735
	SRR6706287	Light intensity 50%	76.227
	SRR6706288	Light intensity 20%	73.919
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	78.923
	CNS0095593	Slightly white alabastrum(diploid) 2	80.576
	CNS0095594	Slightly white alabastrum(diploid) 3	66.686
	CNS0095595	Whole white alabastrum(diploid) 2	62.858
	CNS0095596	Whole white alabastrum(diploid) 3	48.499
	CNS0095597	Whole white alabastrum(diploid) 4	59.121
	CNS0095598	Silvery flower (diploied) 1	117.528
	CNS0095599	Silvery flower (diploied) 2	93.663
	CNS0095600	Silvery flower (diploied) 3	84.193
	CNS0095601	Golden flower (diploid) 1	100.294
	CNS0095602	Golden flower (diploid) 2	84.698
	CNS0095603	Golden flower (diploid) 3	84.867
	CNS0095604	Slightly white alabastrum(tetraploid) 1	84.476
	CNS0095605	Slightly white alabastrum(tetraploid) 2	77.536
	CNS0095606	Slightly white alabastrum(tetraploid) 3	131.453
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.645
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	84.561
	CNS0095610	Silvery flower (tetraploid) 1	127.390
	CNS0095611	Silvery flower (tetraploid) 2	99.315
	CNS0095612	Silvery flower (tetraploid) 3	48.184
	CNS0095613	Golden flower (tetraploid) 1	105.911
	CNS0095614	Golden flower (tetraploid) 2	119.292
	CNS0095615	Golden flower (tetraploid) 3	62.618
CRA001975	CRR073297	Stem 1	42.460
	CRR073298	Stem 2	38.231
	CRR073299	Stem 3	29.462
	CRR073300	Leaf 1	37.964
	CRR073301	Leaf 2	37.818
	CRR073302	Leaf 3	20.781
	CRR073303	Juvenile bud 1	29.391
	CRR073304	Juvenile bud 2	18.753
	CRR073305	Juvenile bud 3	36.665
	CRR073306	Third green 1	3.324
	CRR073307	Third green 2	4.083
	CRR073308	Third green 3	4.421
	CRR073309	Second white 1	2.750
	CRR073310	Second white 2	4.532
	CRR073311	Second white 3	3.439
	CRR073312	Silver flowering 1	4.339
	CRR073313	Silver flowering 2	4.369
	CRR073314	Silver flowering 3	3.064
	CRR073315	Gold flowering 1	17.571
	CRR073316	Gold flowering 2	24.370
	CRR073317	Gold flowering 3	15.910
	CRR073318	Tawny withering 1	33.894
	CRR073319	Tawny withering 2	30.515
	CRR073320	Tawny withering 3	27.530