Gene detail

Detail information of GWHGAAZE003143

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006345909.1	3.62488E-24	PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X3 [Solanum tuberosum]
Swissprot	tr\|Q8VYA5\|RSZ33_ARATH	2E-10	Serine/arginine-rich splicing factor RS2Z33
trEMBL	tr\|M1C5V0\|M1C5V0_SOLTU	1E-24	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400060436}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92760838	92765069	-
GWHAAZE00000001	mRNA	92760838	92765069	-
GWHAAZE00000001	exon	92765048	92765069	-
GWHAAZE00000001	exon	92764248	92764803	-
GWHAAZE00000001	exon	92764027	92764121	-
GWHAAZE00000001	exon	92762599	92762795	-
GWHAAZE00000001	exon	92762379	92762462	-
GWHAAZE00000001	exon	92760838	92761199	-
GWHAAZE00000001	five_prime_UTR	92765048	92765069	-
GWHAAZE00000001	five_prime_UTR	92764293	92764803	-
GWHAAZE00000001	CDS	92764248	92764292	-
GWHAAZE00000001	CDS	92764027	92764121	-
GWHAAZE00000001	CDS	92762599	92762795	-
GWHAAZE00000001	CDS	92762379	92762462	-
GWHAAZE00000001	CDS	92760838	92761199	-

Transcript Sequence
>GWHTAAZE003149 ATGTATTTAGCAGATATGGAAGATGTGGACTCATAGAACTCTTACAATGCACCACATCCAGCACATTCTAGTTGTTTCACTTTCAGTAATCTGGGGTTTCGAAATTTCAATATTTTGGCATCCAAATAGAGGTCAGTGGTCTCCTTTTCTGGGGCTGTTCGACATTGAGTGTTTAAGGGAATGATCAAGCCTTTTGCCAAGCCATTTTTTGTGATTGACATTGACGATTCAACTTTCGTGCAAGATCTATATGAAAATATTGCACCCTCCCACATGTCTAAGCAATTTTAACTTGAATGATCTTTCTGAAGGTTTCTGGGCTTTTGCCAAACCTGGAGGTCTGTTGTGAGAGGTTGCCTTGCCGGAATTGGTCGCTAATCTTGCAGGGCCTGGCGATTCTTTCTATAATGTTATTGCGTGAATTTTCATGGAAATGGCAACAATCATAAAGTGGTGTTTAGTTCTTTGAGGGGCGAAGTATCAACCCTTTGGTACTTATGTCTTGATGGCCTTGTTGTTTCTGGCACCCATTTATGCAGAGTAATGATGATGGATATGAAGCTGACTTTGCCTTTGTGGATTTTAGTGACTCTCGAGATGCTGATGATGCAAGACATAGCTTGAATGGTAGAGAAGTTGATGGAAGTCGAATCATTGTGGAATTTGCGAAGGGGGACAGCGTGGACCAGGTGGGTCTCCGGATTATCTTGGCAGAGGTCCTGCTCGGGATCAGGGCTGCTTTAACTGTGGAATTGATGGCCATTGGGCTCGGATTGCAAAGATGGGGACTGGAAGAACAAGTGTTACCGATGTGGGGACCGAGGTCATATAGAGAAGAACTGTCAGAACAGTCCCAAGAAAATTACGTATACATGGGCGGAGTTATTCGCGGTCACCACCTCCTCGACGTGGCAGAAGCCCAAGCCGTAGTTACAGCAGGAGTAGAAGCTACAGCCGATCTAGGTCACCCCAAAGAGGGAGCGAGAATTGAGCACACCGAGAGAAGATCAAGGAGCCCAAGACGACGCAGGTCTTCACCACCACCACCATCAAAAGGGAGGAGGAACCACAGCCCATCACCTGATGAAAGAGGCACCACCCCATCCCCGAGGAATGGCAGAAAACTCAATGGGCGCTCCAACTCAAGGAGCAGGAGCCCCATGGATGATGATGCTCAAAGAGAGACCACCAAGGTCACTGAAGAAAATGGCAGAGCCCCAGTCCTAGCCCCATCCATAGGGACAATGCAAGCCCTATTGGTGACCACAATGAGGACCGTGGCTCTCCTAGGGCCAGCGTATCAGTTTAAAATGTAA

Network for GWHGAAZE003143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0014	GO:0016973 poly(A)+ mRNA export from nucleus GOslim:biological_process GO:0005643 nuclear pore GOslim:cellular_component map03040 Spliceosome

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	6	40	1.00E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12896	SFRS7	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.879
	SRR3591706	second leaf	5.640
	SRR3591707	mature leaf	6.030
	SRR3591708	Shoot apex	8.517
	SRR3591709	Stem	7.101
	SRR3591710	White floral bud	7.371
	SRR3591711	White flower	7.665
	SRR3591712	Green floral bud	8.714
	SRR3591713	Yellow flower	8.551
SRP173429	SRR8316895	Juvenile bud stage	5.177
	SRR8316896	Juvenile bud stage	7.056
	SRR8316897	Juvenile bud stage	2.408
	SRR8316894	Third green stage	1.887
	SRR8316900	Third green stage	5.903
	SRR8316901	Third green stage	6.924
	SRR8316898	Complete white stage	3.353
	SRR8316899	Complete white stage	9.412
	SRR8316903	Complete white stage	4.725
	SRR8316902	Silver flowering stage	2.139
	SRR8316904	Silver flowering stage	2.937
	SRR8316905	Silver flowering stage	1.872
	SRR8316906	Gold flowering stage	3.603
	SRR8316907	Gold flowering stage	3.884
	SRR8316908	Gold flowering stage	4.935
SRP132670	SRR6706286	Control	2.820
	SRR6706287	Light intensity 50%	7.939
	SRR6706288	Light intensity 20%	3.543
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.519
	CNS0095593	Slightly white alabastrum(diploid) 2	4.667
	CNS0095594	Slightly white alabastrum(diploid) 3	4.005
	CNS0095595	Whole white alabastrum(diploid) 2	2.966
	CNS0095596	Whole white alabastrum(diploid) 3	2.603
	CNS0095597	Whole white alabastrum(diploid) 4	3.318
	CNS0095598	Silvery flower (diploied) 1	4.355
	CNS0095599	Silvery flower (diploied) 2	3.333
	CNS0095600	Silvery flower (diploied) 3	3.746
	CNS0095601	Golden flower (diploid) 1	3.495
	CNS0095602	Golden flower (diploid) 2	3.421
	CNS0095603	Golden flower (diploid) 3	2.419
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.549
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.837
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.295
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.185
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.270
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.208
	CNS0095610	Silvery flower (tetraploid) 1	2.088
	CNS0095611	Silvery flower (tetraploid) 2	1.716
	CNS0095612	Silvery flower (tetraploid) 3	1.655
	CNS0095613	Golden flower (tetraploid) 1	2.067
	CNS0095614	Golden flower (tetraploid) 2	2.824
	CNS0095615	Golden flower (tetraploid) 3	1.647
CRA001975	CRR073297	Stem 1	4.578
	CRR073298	Stem 2	4.583
	CRR073299	Stem 3	5.023
	CRR073300	Leaf 1	5.300
	CRR073301	Leaf 2	4.933
	CRR073302	Leaf 3	3.203
	CRR073303	Juvenile bud 1	3.425
	CRR073304	Juvenile bud 2	1.218
	CRR073305	Juvenile bud 3	4.353
	CRR073306	Third green 1	0.951
	CRR073307	Third green 2	1.069
	CRR073308	Third green 3	1.063
	CRR073309	Second white 1	0.778
	CRR073310	Second white 2	1.094
	CRR073311	Second white 3	0.967
	CRR073312	Silver flowering 1	0.500
	CRR073313	Silver flowering 2	0.976
	CRR073314	Silver flowering 3	1.034
	CRR073315	Gold flowering 1	1.766
	CRR073316	Gold flowering 2	2.787
	CRR073317	Gold flowering 3	1.077
	CRR073318	Tawny withering 1	4.560
	CRR073319	Tawny withering 2	2.980
	CRR073320	Tawny withering 3	4.352