Gene detail

Detail information of GWHGAAZE003138

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04317.1	2.4337E-131	unnamed protein product [Coffea canephora]
COG	YP_007142062.1	2E-18	glutathione S-transferase
Swissprot	tr\|Q8H8U5\|IN21B_ORYSJ	9E-112	Protein IN2-1 homolog B
trEMBL	tr\|A0A068U7Q6\|A0A068U7Q6_COFCA	9E-132	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04317.1}
TAIR10	AT3G55040.1	6E-90	glutathione transferase lambda 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92725323	92727356	-
GWHAAZE00000001	mRNA	92725323	92727356	-
GWHAAZE00000001	exon	92725323	92725328	-
GWHAAZE00000001	exon	92725425	92725505	-
GWHAAZE00000001	exon	92725819	92725926	-
GWHAAZE00000001	exon	92726050	92726126	-
GWHAAZE00000001	exon	92726225	92726327	-
GWHAAZE00000001	exon	92726403	92726501	-
GWHAAZE00000001	exon	92726818	92726904	-
GWHAAZE00000001	exon	92727020	92727080	-
GWHAAZE00000001	exon	92727250	92727356	-
GWHAAZE00000001	CDS	92727250	92727356	-
GWHAAZE00000001	CDS	92727020	92727080	-
GWHAAZE00000001	CDS	92726818	92726904	-
GWHAAZE00000001	CDS	92726403	92726501	-
GWHAAZE00000001	CDS	92726225	92726327	-
GWHAAZE00000001	CDS	92726050	92726126	-
GWHAAZE00000001	CDS	92725819	92725926	-
GWHAAZE00000001	CDS	92725425	92725505	-
GWHAAZE00000001	CDS	92725323	92725328	-

Transcript Sequence
>GWHTAAZE003144 ATGATATCTGTTTTTATTCATTCCCCTTGCAGAAACGTGCACGAGGCTCTCCCACCTGTTCTTGATTCTACCTCTGAACCTCCTGCAATTTTCGATGGAACAACAAGGCTCTACATATCCTACATATGCCCTTTTGCGCAACGCACCTGGATTGCCCGTAATTATAAGGGATTGCAGGACAAGATCAAGTTGGTTCCTATTGACCTGCAAAACAGACCAGCTTGGTACAAGGAGAAAGTTTACCCACCAAACAAGGTGCCATCTTTGGAACACAACAATGAGATTAAAGGAGAGAGTCTTGATTTGCTCAAATACATAGATAGTAACTTTGAAGGACCTTCCCTGACTCCTGACGATCCTGCCAAGAAAGAGTTTGCAGAAGAGTTGCTGTCCTATACCGAGTCATTCAATAAAGCTGTGATCTCTTCCTTCAAGGCAGAGCTGATCAATGAAGCTGCTGAAGCCTTCAACTACCTTGAGAAGGCTCTTTCCAAGTTTGATGACGGGCCATTTTTCCTTGGTCAATTCAGTCTGGTGGATATAGCTTATGCTCCATTCATCGAAAGATTTCAGCCCTTTTTACTGGAAGTGAAGAAATATGACATTGCGGCAGGCAGGCCAAAACTAGGAAGATGGATTGAGGAGATAAACAAAAATGAGGCTTATGCACCGACCCGAAGGGATCCAAAGGAGCTTGTTGAAGCTTACAAGAAGCGTTTCTTGGGGTAG

Network for GWHGAAZE003138

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13417.7	GST_N_3	37	113	1.20E-18
PF13410.7	GST_C_2	146	214	4.40E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.813
	SRR3591706	second leaf	32.081
	SRR3591707	mature leaf	30.301
	SRR3591708	Shoot apex	27.606
	SRR3591709	Stem	31.502
	SRR3591710	White floral bud	161.102
	SRR3591711	White flower	559.668
	SRR3591712	Green floral bud	114.304
	SRR3591713	Yellow flower	1060.933
SRP173429	SRR8316895	Juvenile bud stage	34.325
	SRR8316896	Juvenile bud stage	69.095
	SRR8316897	Juvenile bud stage	33.985
	SRR8316894	Third green stage	23.068
	SRR8316900	Third green stage	76.001
	SRR8316901	Third green stage	67.822
	SRR8316898	Complete white stage	25.554
	SRR8316899	Complete white stage	50.499
	SRR8316903	Complete white stage	45.436
	SRR8316902	Silver flowering stage	91.044
	SRR8316904	Silver flowering stage	110.991
	SRR8316905	Silver flowering stage	73.237
	SRR8316906	Gold flowering stage	312.605
	SRR8316907	Gold flowering stage	318.528
	SRR8316908	Gold flowering stage	316.476
SRP132670	SRR6706286	Control	52.844
	SRR6706287	Light intensity 50%	56.412
	SRR6706288	Light intensity 20%	58.075
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.337
	CNS0095593	Slightly white alabastrum(diploid) 2	49.859
	CNS0095594	Slightly white alabastrum(diploid) 3	59.162
	CNS0095595	Whole white alabastrum(diploid) 2	57.838
	CNS0095596	Whole white alabastrum(diploid) 3	51.137
	CNS0095597	Whole white alabastrum(diploid) 4	59.840
	CNS0095598	Silvery flower (diploied) 1	86.953
	CNS0095599	Silvery flower (diploied) 2	93.112
	CNS0095600	Silvery flower (diploied) 3	215.405
	CNS0095601	Golden flower (diploid) 1	102.879
	CNS0095602	Golden flower (diploid) 2	265.892
	CNS0095603	Golden flower (diploid) 3	263.807
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.181
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.162
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.309
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.837
	CNS0095608	Whole white alabastrum(tetraploid) 2	45.029
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.759
	CNS0095610	Silvery flower (tetraploid) 1	157.237
	CNS0095611	Silvery flower (tetraploid) 2	287.009
	CNS0095612	Silvery flower (tetraploid) 3	602.671
	CNS0095613	Golden flower (tetraploid) 1	115.966
	CNS0095614	Golden flower (tetraploid) 2	128.594
	CNS0095615	Golden flower (tetraploid) 3	226.832
CRA001975	CRR073297	Stem 1	61.157
	CRR073298	Stem 2	53.004
	CRR073299	Stem 3	62.624
	CRR073300	Leaf 1	68.592
	CRR073301	Leaf 2	65.322
	CRR073302	Leaf 3	67.176
	CRR073303	Juvenile bud 1	77.835
	CRR073304	Juvenile bud 2	83.193
	CRR073305	Juvenile bud 3	73.230
	CRR073306	Third green 1	77.910
	CRR073307	Third green 2	75.842
	CRR073308	Third green 3	69.105
	CRR073309	Second white 1	513.761
	CRR073310	Second white 2	373.162
	CRR073311	Second white 3	359.859
	CRR073312	Silver flowering 1	372.945
	CRR073313	Silver flowering 2	348.846
	CRR073314	Silver flowering 3	418.109
	CRR073315	Gold flowering 1	129.670
	CRR073316	Gold flowering 2	119.484
	CRR073317	Gold flowering 3	109.382
	CRR073318	Tawny withering 1	123.005
	CRR073319	Tawny withering 2	112.787
	CRR073320	Tawny withering 3	77.736