Gene detail

Detail information of GWHGAAZE003133

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04335.1	0	unnamed protein product [Coffea canephora]
COG	YP_002607668.1	5E-14	response regulator DrrA
Swissprot	tr\|A2YQ93\|PRR37_ORYSI	4E-135	Two-component response regulator-like PRR37
trEMBL	tr\|A0A068U724\|A0A068U724_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04335.1}
TAIR10	AT5G02810.1	5E-90	pseudo-response regulator 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92669437	92675617	+
GWHAAZE00000001	mRNA	92669437	92675617	+
GWHAAZE00000001	exon	92669437	92669800	+
GWHAAZE00000001	exon	92671792	92671953	+
GWHAAZE00000001	exon	92672074	92672207	+
GWHAAZE00000001	exon	92672580	92672609	+
GWHAAZE00000001	exon	92673611	92673785	+
GWHAAZE00000001	exon	92673881	92674325	+
GWHAAZE00000001	exon	92674855	92675617	+
GWHAAZE00000001	CDS	92669437	92669800	+
GWHAAZE00000001	CDS	92671792	92671953	+
GWHAAZE00000001	CDS	92672074	92672207	+
GWHAAZE00000001	CDS	92672580	92672609	+
GWHAAZE00000001	CDS	92673611	92673785	+
GWHAAZE00000001	CDS	92673881	92674325	+
GWHAAZE00000001	CDS	92674855	92675617	+

Transcript Sequence
>GWHTAAZE003139 ATGAGGAGAGGTATTGCGGTAAACACTAATGGTCCGCCAGCTAAAGGGTTAGCGGAACTCAATCATAGTCATATGCGGGATGAGCAGAAGGAGGTGAGGGATGGAGTTGGTGGTGGTGGGCAGGGGCTCTCCGAAGAGGATGAGTCAAAGATTAATGAGTATTCTGACAAGGTAAAGCACTTGCCTGTCGAGTCTGTGCAGACCCAAGTTGTTCTGCACAGGCAGCAGCAGCAACAACCTCAAGGACCACTGGTTCAGTGGGAACGGTTTCTTCCTCTAAGGTCTCTCAAGGTTTTGCTGGTGGAAAATGACGACTCAACTCGCCATGTTGTTAGTGCTTTGCTTCGAAATTGCAGCTATGAAGTTGTGGCAGTGGCAAATGGTCTAGAAGCATGGAGAATCATAGAAGATCTAAACAATCACATTGATCTCGTTTTAACCGAGGTGGTCATGCCTTGTTTAACGGGGGTTGCTCTCCTATCAATGATTAAGAGCCACAAAACTTGCAAAAACATTCCCGTTATTATGATGTCATCGAATGATTCTATGGGTATAGTCTTTAAGTGTTTGTCAAAAGGTGCAGTTGACTTTCTAGTGAAGCCGATAAGAAAAAATGAGCTTAAAAACCTCTGGCAGCATGTGTGGAGGAAATGCCACAGTGATGGAAGTGACAACGGAAGTGGCACACAGACTTCTTGGTCAAAAAAGGTAGTAGAAGTTGACAGCCCGCAACCAATGTCACCGTGTAACCAATTTGCTGATCCTCCGGAAAGCACTTGTGCCCGGGTTGTTCATTCAAGGCCTGAAGCAATTAGCAAAAACTGGGTACCTAGAACTGACTGCCACAGAGAGGATGATGAACTTGACCTGTGCTGCATTTTATTTACAGACAGTTTTGCGATGGGTAAAGACTTGGAGATAGGAGTCCCTAGAAACTCAGATTTACATCTTGAAGACCCAAACAAACATAAAGATCAAATTTTCGATTTAAACTCGAAGAAAGATGTCGAAAAATTAGGAAACGCAAGGGCGGAGCTCATCAGTGAGGTGGCAAATGGTGAGAGGAGCAAAGAAGCTGTTGATCTTTTGGGTAGCGTTACCAACAACAACTATAAGTCTCAGATGAAATGTGTAGCCAATGAAGTTCCAAATGGCCTGTCCAAAAAGATCACCAGCATCAAAGATAAGGGCATCTGTGAGACCAAGGAACTGCCTTCTCTTGAGCTCAGTTTGAAGAGGCAGAGAGACGTAGGGACCACTTGTCAAGAGCGAAACGTTTTGAGGCATTCGGACCTTTCAGCATTCTCTAGGTATAACACCTCTTCAAATAACAATCAAACTCCAACTGGGAATGTTGGCAGCTGCTCTCCACTTGATAATAGCTTAGAAGGCGCAAAGACCGATTCAACACCAAATTTGCAATCCAAGTCAAATGGCACTCCAAATCAACGTTCAAACGGCAGTAGTAACGATGACATGGGCTCAACAACAAACAACGTTGTTACAAAGCCAGAGGCATTCACTGATAAGCCAATGCCCAAGTCAACAGTAAATATCCATCCCTGTTCTGCATTTCAACCAGTGCAACAACAAGGCCACACTTCTGCCCTTCAGCCTGAAAAGGGTGATGCTGAAACATCTAAGGTCCAAGTCCAGCACCACCACCACCATTACCACCACCACCACCACCATGTACATAACATGCAGCAGCAGCAGGTTAACAGCCATGAGGACTTGTCTTTGCAAAAGAAAGTTGGATCAGCTTCACATTGTGGGCCATCAAATGTCATGAATGGATCAATTGAAGGAAATGCTGCCAACTACAGTTTGAATGGAAGCACATCGGGAAGTAACAAAAGAAGCGGTGGGGTGAATGGCAGCAGTGGGCAAAATGGCAGTTGCAGTGCTGCAATGGCTGAAGGAATGCAAATGGCAAGTGATAATGGAGGCTGCAAAATGTGGAGCTGATGATGGAAGTGGAAGTGGTAGTGGAAGCAGGAGTGGGGTAGATCAAAACCGGTTGGCACAGAGAGAGGCCGCTTTAAACAAATTTCGACAGAAGAGGAAAGATAG

Network for GWHGAAZE003133

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	98	209	2.10E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K12129	PRR7	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	95.769
	SRR3591706	second leaf	91.190
	SRR3591707	mature leaf	91.440
	SRR3591708	Shoot apex	107.246
	SRR3591709	Stem	118.677
	SRR3591710	White floral bud	82.828
	SRR3591711	White flower	89.581
	SRR3591712	Green floral bud	79.155
	SRR3591713	Yellow flower	83.900
SRP173429	SRR8316895	Juvenile bud stage	38.999
	SRR8316896	Juvenile bud stage	42.074
	SRR8316897	Juvenile bud stage	33.407
	SRR8316894	Third green stage	19.645
	SRR8316900	Third green stage	45.256
	SRR8316901	Third green stage	42.426
	SRR8316898	Complete white stage	16.929
	SRR8316899	Complete white stage	60.682
	SRR8316903	Complete white stage	42.048
	SRR8316902	Silver flowering stage	22.116
	SRR8316904	Silver flowering stage	37.782
	SRR8316905	Silver flowering stage	16.595
	SRR8316906	Gold flowering stage	50.142
	SRR8316907	Gold flowering stage	44.561
	SRR8316908	Gold flowering stage	55.154
SRP132670	SRR6706286	Control	56.127
	SRR6706287	Light intensity 50%	54.977
	SRR6706288	Light intensity 20%	53.977
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.910
	CNS0095593	Slightly white alabastrum(diploid) 2	48.132
	CNS0095594	Slightly white alabastrum(diploid) 3	37.346
	CNS0095595	Whole white alabastrum(diploid) 2	38.312
	CNS0095596	Whole white alabastrum(diploid) 3	29.169
	CNS0095597	Whole white alabastrum(diploid) 4	35.787
	CNS0095598	Silvery flower (diploied) 1	79.812
	CNS0095599	Silvery flower (diploied) 2	64.175
	CNS0095600	Silvery flower (diploied) 3	62.675
	CNS0095601	Golden flower (diploid) 1	65.597
	CNS0095602	Golden flower (diploid) 2	67.729
	CNS0095603	Golden flower (diploid) 3	68.928
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.425
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.258
	CNS0095606	Slightly white alabastrum(tetraploid) 3	110.060
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.627
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.095
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.336
	CNS0095610	Silvery flower (tetraploid) 1	109.584
	CNS0095611	Silvery flower (tetraploid) 2	87.035
	CNS0095612	Silvery flower (tetraploid) 3	40.204
	CNS0095613	Golden flower (tetraploid) 1	76.322
	CNS0095614	Golden flower (tetraploid) 2	99.087
	CNS0095615	Golden flower (tetraploid) 3	59.481
CRA001975	CRR073297	Stem 1	35.479
	CRR073298	Stem 2	30.227
	CRR073299	Stem 3	24.199
	CRR073300	Leaf 1	34.767
	CRR073301	Leaf 2	31.408
	CRR073302	Leaf 3	19.282
	CRR073303	Juvenile bud 1	24.996
	CRR073304	Juvenile bud 2	18.641
	CRR073305	Juvenile bud 3	31.471
	CRR073306	Third green 1	2.934
	CRR073307	Third green 2	3.295
	CRR073308	Third green 3	3.680
	CRR073309	Second white 1	2.976
	CRR073310	Second white 2	4.120
	CRR073311	Second white 3	3.093
	CRR073312	Silver flowering 1	1.789
	CRR073313	Silver flowering 2	4.468
	CRR073314	Silver flowering 3	2.183
	CRR073315	Gold flowering 1	14.067
	CRR073316	Gold flowering 2	21.082
	CRR073317	Gold flowering 3	13.471
	CRR073318	Tawny withering 1	25.549
	CRR073319	Tawny withering 2	22.174
	CRR073320	Tawny withering 3	19.918