Detail information of GWHGAAZE003124


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010319297.15.73937E-88PREDICTED: uncharacterized protein LOC101257555 isoform X1 [Solanum lycopersicum]
trEMBLtr|K4BPA7|K4BPA7_SOLLC5E-88Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g009510.2.1}
TAIR10AT3G45630.13E-64RNA binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9254294192545920+
GWHAAZE00000001mRNA9254294192545920+
GWHAAZE00000001exon9254294192543039+
GWHAAZE00000001exon9254525892545385+
GWHAAZE00000001exon9254546492545635+
GWHAAZE00000001exon9254580792545920+
GWHAAZE00000001CDS9254294192543039+
GWHAAZE00000001CDS9254525892545385+
GWHAAZE00000001CDS9254546492545635+
GWHAAZE00000001CDS9254580792545920+
Transcript Sequence

Network for GWHGAAZE003124

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14570.7zf-RING_411635.80E-21
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10643CNOT4, NOT4, MOT2 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE003124.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 302.557.51012.51517.52022.52527.53032.5Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.505
SRR3591706second leaf22.747
SRR3591707mature leaf14.564
SRR3591708Shoot apex25.597
SRR3591709Stem16.653
SRR3591710White floral bud7.631
SRR3591711White flower8.956
SRR3591712Green floral bud9.264
SRR3591713Yellow flower3.131
SRP173429 SRR8316895Juvenile bud stage 9.399
SRR8316896Juvenile bud stage 9.028
SRR8316897Juvenile bud stage 3.475
SRR8316894Third green stage 5.174
SRR8316900Third green stage 12.431
SRR8316901Third green stage 7.477
SRR8316898Complete white stage 1.661
SRR8316899Complete white stage 12.134
SRR8316903Complete white stage 2.775
SRR8316902Silver flowering stage0.648
SRR8316904Silver flowering stage2.615
SRR8316905Silver flowering stage0.898
SRR8316906Gold flowering stage 1.480
SRR8316907Gold flowering stage 0.921
SRR8316908Gold flowering stage 2.333
SRP132670SRR6706286Control25.784
SRR6706287Light intensity 50%24.347
SRR6706288Light intensity 20%23.979
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.694
CNS0095593Slightly white alabastrum(diploid) 22.820
CNS0095594Slightly white alabastrum(diploid) 32.781
CNS0095595Whole white alabastrum(diploid) 23.827
CNS0095596Whole white alabastrum(diploid) 31.086
CNS0095597Whole white alabastrum(diploid) 42.864
CNS0095598Silvery flower (diploied) 112.895
CNS0095599Silvery flower (diploied) 211.873
CNS0095600Silvery flower (diploied) 37.615
CNS0095601Golden flower (diploid) 18.686
CNS0095602Golden flower (diploid) 210.859
CNS0095603Golden flower (diploid) 313.258
CNS0095604Slightly white alabastrum(tetraploid) 17.103
CNS0095605Slightly white alabastrum(tetraploid) 22.891
CNS0095606Slightly white alabastrum(tetraploid) 319.471
CNS0095607Whole white alabastrum(tetraploid) 14.080
CNS0095608Whole white alabastrum(tetraploid) 22.680
CNS0095609Whole white alabastrum(tetraploid) 38.562
CNS0095610Silvery flower (tetraploid) 15.865
CNS0095611Silvery flower (tetraploid) 28.215
CNS0095612Silvery flower (tetraploid) 32.543
CNS0095613Golden flower (tetraploid) 11.430
CNS0095614Golden flower (tetraploid) 24.994
CNS0095615Golden flower (tetraploid) 31.467
CRA001975CRR073297Stem 120.856
CRR073298Stem 217.792
CRR073299Stem 319.103
CRR073300Leaf 114.756
CRR073301Leaf 215.399
CRR073302Leaf 37.986
CRR073303Juvenile bud 15.944
CRR073304Juvenile bud 27.662
CRR073305Juvenile bud 311.046
CRR073306Third green 10.641
CRR073307Third green 21.164
CRR073308Third green 32.788
CRR073309Second white 11.005
CRR073310Second white 20.374
CRR073311Second white 30.467
CRR073312Silver flowering 10.325
CRR073313Silver flowering 21.198
CRR073314Silver flowering 30.243
CRR073315Gold flowering 111.381
CRR073316Gold flowering 230.373
CRR073317Gold flowering 315.724
CRR073318Tawny withering 18.186
CRR073319Tawny withering 26.338
CRR073320Tawny withering 310.042