Gene detail

Detail information of GWHGAAZE003088

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010658422.1	0	PREDICTED: uncharacterized protein LOC100240985 isoform X1 [Vitis vinifera]
trEMBL	tr\|F6HNI1\|F6HNI1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56200.1}
TAIR10	AT3G52250.1	2E-149	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	91887853	91899196	+
GWHAAZE00000001	mRNA	91887853	91899196	+
GWHAAZE00000001	exon	91887853	91888291	+
GWHAAZE00000001	exon	91888786	91889625	+
GWHAAZE00000001	exon	91891587	91891661	+
GWHAAZE00000001	exon	91892773	91893927	+
GWHAAZE00000001	exon	91895562	91898490	+
GWHAAZE00000001	exon	91898986	91899036	+
GWHAAZE00000001	exon	91899106	91899196	+
GWHAAZE00000001	five_prime_UTR	91887853	91888128	+
GWHAAZE00000001	CDS	91888129	91888291	+
GWHAAZE00000001	CDS	91888786	91889625	+
GWHAAZE00000001	CDS	91891587	91891661	+
GWHAAZE00000001	CDS	91892773	91893927	+
GWHAAZE00000001	CDS	91895562	91898490	+
GWHAAZE00000001	CDS	91898986	91899036	+
GWHAAZE00000001	CDS	91899106	91899196	+

Transcript Sequence
>GWHTAAZE003094 CTCACAAAAATTGGCGGAGCTGTGTGAAGAGCTTTTCATCGTTTTCAAAACCCTAATTCACCAACAGATACAGAAGAACATCGTATAAATCGATCGCCGTCGAATATTCCCCCCCTTCGATCTGGTACCGTATACCCTAAAGTCCAGATTCCAGCTCTGTTTGTTTTGCCGTTTTGCGTTTGGGGGTTGTTGGGAACCCTATATGCTGTTGGATTGACTTTGTGTGTTGGTAGAGAGGGTGGCGTTGTGGCTGATGCGATTGAGTTGTGTATTTTCATGCCGCCGGAGCCATTGCCGTGGGATCGGAAGGACTTCTTCAAGGAGAGGAAGCATTCTGAGAGGTCTTCAGAAACCCTAGGGGGGTCCTTGCCTAGATGGAGAGATACGCCGCACCACGGACCCTATCGATGGGGATCGGCCGAGTTTCGCAGGCCTCCTGGTCATGGTAAGCAGGGTGGTTGGCATATTTTTGAAGAATCTGGACATGGGTTTGCGCCCACTCGGTCCATTGACAAGATTCTGGATGATGAGAGCTGTCGTCCCTCTGGGTCTCGTGGGGAAGGAAAATACGGTAGAAACAGCAGGGAAAATAGGGGGTCTTTTAGTCAGAGGGATTGGAAAGGAAGTTCATGGGAAATTGGTGCATCTCCAAATGGTCCTGTGAGGCAAGCAGATGTGAGCGATCAGAGGTCAGTGGATGATTTAACGTACAACTCTCATCCTCATTCTGACTCATGGGATCAATTTCACTTCAAAGACCAGCATGATAAGATTGGTGGCGTTGGTGGCTTGGGTACAGGTCCGAGATTTGACAAAGATAATGCAATGGGCTCTATTGACTGGAAACCTCTTAAATGGACTCGATCTGGAAGTTTATCCTCACGGGGTTCTAGTTTTAGCCATTCGAGTAGTTCCAAGAGCATTGGAGTGGATTCAAATGAAATGAAGGCAGAGGCACACCCCAGGAACGTGACTCCATTACAGTCTCCATCAGGGGATGCTGCGGCCTGTGTGACATCTGCGGCTCCAGCTGAAGAGATGAATTCCAGAAAGAAGCCACGCCTTGGATGGGGTGAGGGACTGGCAAAATATGAGAAGAAGAGAGTTGAAGGGCCCGATGATATTGCACCCAAAAATGGAATGGTCACATGCGGTGGTAATACAGAACCTCTGCATTCCCATATTTCACATATGGCTGATAAAAGTCCAAGAGTTGCAGGTTATTCGGAGTGTGCATCTCCTGCTACTCCCTCTTCGGTTGCTTGTAGTTCCTCACCAGGTCAGCCCTTTCTATGTGCCTCCTTTTTTCCAGTGAGCCTGATGTACTTTTTCCTTGCTGTTCTTACTTTTATCAGCCTGGAGGATAAACCTTTTGCCAAGGCTGCAAATGTTGATACTGGTACTAGTAAATTAAGCGTTTCACCCCGGCCTGTGCCTCAGAATCTCTGTGAGGTTTTACCTTTTAATTTAGAGAATCTGGAGCCTGTTCCAGTTCCTAATTTGTGCTCTTCACTTGATGAATTGCTACAACCTGATGATCCAAGCTCCATTGACTCTGCTTTTGTGAGATCTTCTGCAATGAACAAGTTGCTAATATTGAAAGCTAACATTTCAAAGTCACTGGAAATGACCGAATCTGAAATTGATTTGCTAGAAAATGAATTGAAGACACTGCGTTCCGACTCTGCGATTACATTTCCTCGTCCAGCGTCTTCCAGTTCTTTGCCAGTGACTTGCAAAGCAAACCCTAATGAAGAACCTTATGCTGCCTCGAATTTAATTCCTAGACCTGCTCCTTTGGAATTTCTTTCTTCTGGAGAAATGATTTTGGAGAAAACACTTTGCTCCCAGGAAAGAGAACATGCCGAAGGTAAAGACCAGGACATTGATAGTCCAGGTACCGCGACATCAAAATTTGTTGAACCACTTTCCTCAGGGAAGGCTGTCTTCCCCTCTGACACAGTGAAAAATGGTGACTGTTCTGGCAATGTGGATATTAGACCTGAAAACTTTGAAGAGAAATGTTCTGTAGATGGCATTAATAGGGAAATGACAGATGCATCTGCTTGTGCAGATGGTGTTCTGCTCGTAGCAAGCAGTAGTTCTACCACTCTTTCAACTGATATTGGCGTGAATTGTGATAGAGATGTTATATTATGTGATTTAATATTAACTGCAAACAAAGATTCTGCCCGTAGAGCTTCTGAAGTATTTAGTAAGTTATTGCCATCTAGTAATATTTCAACATTAGCCAGCGGTCCTTGCTGGAAAAGTGATCCGTTGATAAAGGAGAAGTTTGCAAGGAGGAAGCATTTCTTAAGATTTAAGGAGAGAGTCATCACCCTCAAGTTTAGGGCATTTCAGCACCTCTGGAAGGAAGATCTACGCTTGCTGTCTATAAGGAGACATCGGGCAAAGTCTCAAAAAAGGTTTGAACTAAGCTCTCGTAATGGGCATAGCAGCAATCAAAAACATCGTTCCTCCATCCGCTCTCGCTTTTCATCTCCAGCTGGAAATTTGAGCCTAGTTCCTACTACTGAGATAATTAATTATGCAAGTAAGCTGCTTTCAGATAGCCAAGTCCAGATTAACAGAAGTACGCTGAAGATGCCTTCTCTAATTTTGGACAGGAAGGAGAAGATAATTTCAAGGTTCATTACAAAGAATGGATTAGTGGAAGATGCCTGTACTGTTGAGAAGGAGAGATGTATGATCAACCCTTGGACATCAGAAGAGAAGATAATTTTCATGGAAAAGTTTGCTATACATGGAAAAGACTTCAGAAAAATCGCAGCTTTTCTTGATCACAAGACAACTGCAGATTGTGTTGAGTTTTACTACAAGAACCACAAGGCAGACTGTTTTCCGAAAACAAAGAAGAAACCAGAGTTTGCAAAGCAAGGGAAGTCCTATTCAAGCAGTACCTACTTGGTTACTTCTGGGAAAAGATGGAACCGCGAGGCTAGTGCCATTGCTTCTCTTGATATGCTGGGTGCAGCGACGGCAATAGCAGCAAATGTTGATGATGGCATTGAAAGTCATAACAAGCGTGCATCAAGGTTCTTCTTTGGGGGGTCCGGTGATTATAAAACACCCAGAGTTGAAGATGGTACCGTAGAGCGGTCAACAAATCTTGATATCTTTTGTAGTGAGAGAGAAAGTGTTGCTGCCGATGTGTTGGCAGGGATATGTGGGTCTCTATCATCAGAAGCTATGAGTTCTTGCATAACTAGTTCGGTTGACCCTGGAGAGGCCTACCAACAGGACCAGCGCATGTGTCAGAAAATGGGTGGTTCTTCAGTAAGGCGTCCCTTGACACCAGAGGTCACACAGAACGTTGATGACGAGACCTGTTCTGATGAGAGTTGTGGGGAGATGGATCCTTCTGATTGGACAGACGATGAGAAATCTATCTTCATACGGGCTGTTTCATCATATGGTAAAGATTTCAGAATGATATCTCGATGTGTTCGAACTAGGTCCACTAATCAGTGCAAGATCTTCTTTAGCAAGGCTCGGAAGTGTCTCGGGCTGGATATGGTGCAACCTGGTCCTGGCAATGAAGGAACACGGATGAGTGATGATGCCAATGGAGGTGGGAGTGACACTGAGGATGCTTGCATTGTGGAGACAGGCTCTATTATTTGCAGCGACAAGTCGGAGTTGAAGATGGACGAAGATCTTCGCTTGTTAGATTTGAAAGCAACCAATGATGAATCTGATCCTCCAGTGACCATGAAAATGGACCAATCAGAGGAAAACAATGGGACTGGAGAAGTGGAGTTCAAAGATTCCGAGCTGAAGTCTGAGATATTGGCTTCTGATGATTGCGAGGCAGAGCATAAGCCAGAATTAGACTGTGATGGCGATAGTAATATTGATAATGGTGTTGCCTCAGTGGGGGTCGGCGAGAATGCAGTTATACACTCTGGTACAGAAGCTGGGGAAAGTGAAGCTACTGGGCATGAAAGTATGGAGGAAACATTATCTGGTGGTGAAGGAAATGACCACGACCTGCCTCCTGTATCTAGTGCTGAGGCCGAGACTATGGCCGCGGGTCAGGCTTTTGCGGAGTATTCTAGACCTGAAATGGTGGAACACGAGCTGCTGTTACCTGGAAGCAGTTCAAATGATAAACGAGTTGAAAGTGGTGATGCCAATACCAGTTGTGCGAGTGGAAGTTGCCTTGTACAAGATTCAAATTCTATTCCTCAATCTGTTGGAAATGTTCCTGTTCTTATCAGCGATCCTCTACATATGCCGTCACCAATACTTGATTTTGGAAAGATAAGTCCTGAGCAGTGTGAGAAGTCTGTGGAGCTGTCTGGGCCGTCTTTGTTGGATCATGTTGAGTCCTCCCAGATTCTAAGGGGATATCCAGTATCTGTGTCGTTGTCCAAGAAAGGAATGAATGGATTTATCAATGGCAAGAATCCTGCTTTGCATCAAAGCTTGATGCCCAAATTGGATAGCAAATCCCAATCCGACAGTTATTTACTGCAGCAGGATTGCTATCTTCGAAAGTGTAATAATGATCGAAAACGCCATCATAGTTCACTCTCTGAACTTCAGCTCCTGTCCAATCAGAAAGAGAGGAAGGATCATACAAGACCCCAGACTTCCAGTTCATCTGATGAAGTGAAACCTTGCAGGAACAGTAATAATGTGAAACTCTTTGGTCAGATTCTAACTCACACCGCATCTCAGCATGAACAACCAAATTCAAGTACAAGTGAAAATGATGATAAGGAACCTGAGCAGTCCAAATTAAGCGGGAAGTCCTTTAACTTGAAATTCACTGGTAGTCAGAGCTCGGATGGAAAGGTCGAACGTCATAATTATTTGGCGTATGATAATCGTCCGGTTAGGAGTTATGGTTTTTGGGATGGAAACAGGATACAAACCGGGTTTCCTTCTTTACCTGACTCTGCTATGTTGCTGGCTAAATATCCCGCTGCCTTTGGTAACTATCCGCTGTCCTCATCAAAAATAGAGCAGCAGCAGCAGCCATTACATCCAGTGGTAAAGAGTAATGAACACAAATTGAATGCCGTATCAGTTTTTCCAACAAGAGAAATAATAAGCAGCAACGGAGTCTCTGATTATCAGGTGTACAGAAGCCGGGATAGTACTAAAGTGCAGCCTTTTACAGTAGATATGAAACAGAGACAAGAAAAATTAATATCTGAGATGCAAAGACGAAGTGAAATTGAGTCGGTCTCAAATATGCAACAGCAAACAAGGGGTATGGTTGGGATCGTGGGGAGAGGGGGTATTCTTGTGGGGGGTGGTCCATGTAGTACGGGTGTTTCAGACCCTGTGGCAGCCATTAAGCTGCATTATGCCAAAAAGGAAAACTTAAACGGGCATGGTGGTGGTGGGAGCGTCATCAGTGAGCAGCAGGAATCTTGGAGAGGTAATGGTGGTGATATAGGAAGAGTTGCTGCTGCAAAATGCTCGAATCTATTTCTCGTTGTCATCTGCCAAGGGAATTATACGTTGGTTTGGGATTTTTGCCTTGGAACTATTGGAGCTGCAACCCCAGATCCTAGTGTGATGGCACAAGCTACCCGCATTTGA

Network for GWHGAAZE003088

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	815	856	8.40E-06
PF00249.32	Myb_DNA-binding	1037	1078	2.70E-07

Protein Sequence

>GWHPAAZE003091
MPPEPLPWDRKDFFKERKHSERSSETLGGSLPRWRDTPHHGPYRWGSAEFRRPPGHGKQGGWHIFEESGHGFAPTRSIDKILDDESCRPSGSRGEGKYGRNSRENRGSFSQRDWKGSSWEIGASPNGPVRQADVSDQRSVDDLTYNSHPHSDSWDQFHFKDQHDKIGGVGGLGTGPRFDKDNAMGSIDWKPLKWTRSGSLSSRGSSFSHSSSSKSIGVDSNEMKAEAHPRNVTPLQSPSGDAAACVTSAAPAEEMNSRKKPRLGWGEGLAKYEKKRVEGPDDIAPKNGMVTCGGNTEPLHSHISHMADKSPRVAGYSECASPATPSSVACSSSPGQPFLCASFFPVSLMYFFLAVLTFISLEDKPFAKAANVDTGTSKLSVSPRPVPQNLCEVLPFNLENLEPVPVPNLCSSLDELLQPDDPSSIDSAFVRSSAMNKLLILKANISKSLEMTESEIDLLENELKTLRSDSAITFPRPASSSSLPVTCKANPNEEPYAASNLIPRPAPLEFLSSGEMILEKTLCSQEREHAEGKDQDIDSPGTATSKFVEPLSSGKAVFPSDTVKNGDCSGNVDIRPENFEEKCSVDGINREMTDASACADGVLLVASSSSTTLSTDIGVNCDRDVILCDLILTANKDSARRASEVFSKLLPSSNISTLASGPCWKSDPLIKEKFARRKHFLRFKERVITLKFRAFQHLWKEDLRLLSIRRHRAKSQKRFELSSRNGHSSNQKHRSSIRSRFSSPAGNLSLVPTTEIINYASKLLSDSQVQINRSTLKMPSLILDRKEKIISRFITKNGLVEDACTVEKERCMINPWTSEEKIIFMEKFAIHGKDFRKIAAFLDHKTTADCVEFYYKNHKADCFPKTKKKPEFAKQGKSYSSSTYLVTSGKRWNREASAIASLDMLGAATAIAANVDDGIESHNKRASRFFFGGSGDYKTPRVEDGTVERSTNLDIFCSERESVAADVLAGICGSLSSEAMSSCITSSVDPGEAYQQDQRMCQKMGGSSVRRPLTPEVTQNVDDETCSDESCGEMDPSDWTDDEKSIFIRAVSSYGKDFRMISRCVRTRSTNQCKIFFSKARKCLGLDMVQPGPGNEGTRMSDDANGGGSDTEDACIVETGSIICSDKSELKMDEDLRLLDLKATNDESDPPVTMKMDQSEENNGTGEVEFKDSELKSEILASDDCEAEHKPELDCDGDSNIDNGVASVGVGENAVIHSGTEAGESEATGHESMEETLSGGEGNDHDLPPVSSAEAETMAAGQAFAEYSRPEMVEHELLLPGSSSNDKRVESGDANTSCASGSCLVQDSNSIPQSVGNVPVLISDPLHMPSPILDFGKISPEQCEKSVELSGPSLLDHVESSQILRGYPVSVSLSKKGMNGFINGKNPALHQSLMPKLDSKSQSDSYLLQQDCYLRKCNNDRKRHHSSLSELQLLSNQKERKDHTRPQTSSSSDEVKPCRNSNNVKLFGQILTHTASQHEQPNSSTSENDDKEPEQSKLSGKSFNLKFTGSQSSDGKVERHNYLAYDNRPVRSYGFWDGNRIQTGFPSLPDSAMLLAKYPAAFGNYPLSSSKIEQQQQPLHPVVKSNEHKLNAVSVFPTREIISSNGVSDYQVYRSRDSTKVQPFTVDMKQRQEKLISEMQRRSEIESVSNMQQQTRGMVGIVGRGGILVGGGPCSTGVSDPVAAIKLHYAKKENLNGHGGGGSVISEQQESWRGNGGDIGRVAAAKCSNLFLVVICQGNYTLVWDFCLGTIGAATPDPSVMAQATRI

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.287
	SRR3591706	second leaf	21.485
	SRR3591707	mature leaf	24.520
	SRR3591708	Shoot apex	24.713
	SRR3591709	Stem	24.969
	SRR3591710	White floral bud	31.439
	SRR3591711	White flower	38.805
	SRR3591712	Green floral bud	31.406
	SRR3591713	Yellow flower	32.189
SRP173429	SRR8316895	Juvenile bud stage	11.285
	SRR8316896	Juvenile bud stage	16.212
	SRR8316897	Juvenile bud stage	7.134
	SRR8316894	Third green stage	9.481
	SRR8316900	Third green stage	20.435
	SRR8316901	Third green stage	18.579
	SRR8316898	Complete white stage	6.249
	SRR8316899	Complete white stage	23.807
	SRR8316903	Complete white stage	17.323
	SRR8316902	Silver flowering stage	10.135
	SRR8316904	Silver flowering stage	18.113
	SRR8316905	Silver flowering stage	8.224
	SRR8316906	Gold flowering stage	27.859
	SRR8316907	Gold flowering stage	21.573
	SRR8316908	Gold flowering stage	25.936
SRP132670	SRR6706286	Control	20.450
	SRR6706287	Light intensity 50%	21.503
	SRR6706288	Light intensity 20%	22.363
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.649
	CNS0095593	Slightly white alabastrum(diploid) 2	10.152
	CNS0095594	Slightly white alabastrum(diploid) 3	9.205
	CNS0095595	Whole white alabastrum(diploid) 2	9.008
	CNS0095596	Whole white alabastrum(diploid) 3	5.875
	CNS0095597	Whole white alabastrum(diploid) 4	8.886
	CNS0095598	Silvery flower (diploied) 1	21.323
	CNS0095599	Silvery flower (diploied) 2	13.939
	CNS0095600	Silvery flower (diploied) 3	35.841
	CNS0095601	Golden flower (diploid) 1	16.833
	CNS0095602	Golden flower (diploid) 2	44.744
	CNS0095603	Golden flower (diploid) 3	41.885
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.265
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.401
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.110
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.946
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.261
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.394
	CNS0095610	Silvery flower (tetraploid) 1	38.220
	CNS0095611	Silvery flower (tetraploid) 2	36.190
	CNS0095612	Silvery flower (tetraploid) 3	29.088
	CNS0095613	Golden flower (tetraploid) 1	19.588
	CNS0095614	Golden flower (tetraploid) 2	33.451
	CNS0095615	Golden flower (tetraploid) 3	52.388
CRA001975	CRR073297	Stem 1	26.757
	CRR073298	Stem 2	24.551
	CRR073299	Stem 3	20.295
	CRR073300	Leaf 1	22.698
	CRR073301	Leaf 2	19.222
	CRR073302	Leaf 3	15.700
	CRR073303	Juvenile bud 1	15.766
	CRR073304	Juvenile bud 2	12.966
	CRR073305	Juvenile bud 3	28.430
	CRR073306	Third green 1	12.539
	CRR073307	Third green 2	7.616
	CRR073308	Third green 3	13.016
	CRR073309	Second white 1	12.353
	CRR073310	Second white 2	15.679
	CRR073311	Second white 3	21.625
	CRR073312	Silver flowering 1	21.998
	CRR073313	Silver flowering 2	24.654
	CRR073314	Silver flowering 3	19.703
	CRR073315	Gold flowering 1	10.985
	CRR073316	Gold flowering 2	18.980
	CRR073317	Gold flowering 3	17.504
	CRR073318	Tawny withering 1	18.597
	CRR073319	Tawny withering 2	13.572
	CRR073320	Tawny withering 3	15.251