Gene detail

Detail information of GWHGAAZE003075

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006436285.1	5.5533E-123	hypothetical protein CICLE_v10032157mg [Citrus clementina]
COG	YP_007779934.1	2E-16	Serine/threonine protein kinase
Swissprot	tr\|C0LGH3\|Y5614_ARATH	2E-63	Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (Precursor)
trEMBL	tr\|V4TD48\|V4TD48_9ROSI	2E-123	Uncharacterized protein {ECO:0000313\|EMBL:ESR49525.1}
TAIR10	AT1G16670.1	6E-72	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	91523064	91525024	+
GWHAAZE00000001	mRNA	91523064	91525024	+
GWHAAZE00000001	exon	91523064	91523097	+
GWHAAZE00000001	exon	91523233	91523470	+
GWHAAZE00000001	exon	91523562	91523712	+
GWHAAZE00000001	exon	91524728	91525024	+
GWHAAZE00000001	CDS	91523064	91523097	+
GWHAAZE00000001	CDS	91523233	91523470	+
GWHAAZE00000001	CDS	91523562	91523712	+
GWHAAZE00000001	CDS	91524728	91525024	+

Transcript Sequence
>GWHTAAZE003079 ATGGAAAACAATAGCCTTGCTCAAACTTTACATGGCGGAGAAGGAAAAAGAGCTAAATTTAGCTGGAAAGCACGGAGAGAAATTGCCTTGGGAATTGCTCGAGGGCTGGCATTCATTCACGAGGATGTTAAACCTCATGTTGTGCATCGTGATATCAAGGGTAGTAACATACTTCTTGATCGGAATTTTGTTCCCAAAGTTTCTGATTTCGGTCTCTCAAAATTATTCCCCGAGAACACCACGCACCTGAGCACTCGAGTAGCCGGAACATTAGGCTATCTTGCGCCAGAGTACGCCATTACAGGTCATATAACGAGAAAGACAGATGTGTATAGTTTTGGAGTGTTACTTCTAGAAATGGTCAGCGGACGTTCTGCTGTCGACTTTGACGTCGAACTTGGGGAGCACTATCTTGTAGAGAAGGCTTGGGATATGTACAAGGGGAACAAGCTTGTGGAACTGGTAGACCCAATGCTGAAAGGCAACTTCAACGAAAGGGAAGCTCTTCGCTTCATTAAAGTTGGACTACTATGCGTTCAAGAGATTGGCCGATCTCGGCCCCATGTTTCTACCGCAATTAAGATGATGAACGGCGAGATCAAAATCGATGATTTAGAGATACAGCAACCGGGGCTCATCACTGATATCATGGACGTTAAAATAGGCAGAGGTTCCTCCTCACAATCCACCAACTCCAGCAACCCTAGCCCATTCTTCTAA

Network for GWHGAAZE003075

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	1	128	1.90E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.157
	SRR3591709	Stem	0.048
	SRR3591710	White floral bud	0.812
	SRR3591711	White flower	0.207
	SRR3591712	Green floral bud	0.585
	SRR3591713	Yellow flower	0.342
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.175
	SRR8316897	Juvenile bud stage	0.046
	SRR8316894	Third green stage	0.208
	SRR8316900	Third green stage	0.466
	SRR8316901	Third green stage	0.081
	SRR8316898	Complete white stage	0.055
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.481
	SRR8316902	Silver flowering stage	0.306
	SRR8316904	Silver flowering stage	0.436
	SRR8316905	Silver flowering stage	0.226
	SRR8316906	Gold flowering stage	0.750
	SRR8316907	Gold flowering stage	0.969
	SRR8316908	Gold flowering stage	1.824
SRP132670	SRR6706286	Control	0.298
	SRR6706287	Light intensity 50%	0.051
	SRR6706288	Light intensity 20%	0.051
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.121
	CNS0095593	Slightly white alabastrum(diploid) 2	0.116
	CNS0095594	Slightly white alabastrum(diploid) 3	0.060
	CNS0095595	Whole white alabastrum(diploid) 2	0.155
	CNS0095596	Whole white alabastrum(diploid) 3	0.058
	CNS0095597	Whole white alabastrum(diploid) 4	0.372
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.051
	CNS0095600	Silvery flower (diploied) 3	0.084
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.420
	CNS0095603	Golden flower (diploid) 3	0.717
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.127
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.413
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.514
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.550
	CNS0095610	Silvery flower (tetraploid) 1	1.364
	CNS0095611	Silvery flower (tetraploid) 2	0.937
	CNS0095612	Silvery flower (tetraploid) 3	0.894
	CNS0095613	Golden flower (tetraploid) 1	4.458
	CNS0095614	Golden flower (tetraploid) 2	1.442
	CNS0095615	Golden flower (tetraploid) 3	1.213
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.238
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.201
	CRR073301	Leaf 2	0.069
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.074
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.708
	CRR073308	Third green 3	0.547
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.098
	CRR073311	Second white 3	0.096
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.781
	CRR073314	Silver flowering 3	0.127
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.267
	CRR073319	Tawny withering 2	0.422
	CRR073320	Tawny withering 3	1.535