Gene detail

Detail information of GWHGAAZE003069

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011077008.1	0	PREDICTED: protein disulfide isomerase-like 1-3 [Sesamum indicum]
COG	YP_003239610.1	1E-15	thioredoxin
Swissprot	tr\|Q8VX13\|PDI13_ARATH	0	Protein disulfide isomerase-like 1-3 (Precursor)
trEMBL	tr\|A7KY78\|A7KY78_OLDAF	0	Protein disulfide-isomerase {ECO:0000256\|RuleBase:RU361130} (Fragment)
TAIR10	AT3G54960.1	0	PDI-like 1-3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	91409136	91413889	+
GWHAAZE00000001	mRNA	91409136	91413889	+
GWHAAZE00000001	exon	91409136	91409665	+
GWHAAZE00000001	exon	91410623	91410752	+
GWHAAZE00000001	exon	91411004	91411169	+
GWHAAZE00000001	exon	91411251	91411369	+
GWHAAZE00000001	exon	91411453	91411533	+
GWHAAZE00000001	exon	91411928	91412014	+
GWHAAZE00000001	exon	91412138	91412212	+
GWHAAZE00000001	exon	91412339	91412407	+
GWHAAZE00000001	exon	91412491	91412571	+
GWHAAZE00000001	exon	91412671	91412805	+
GWHAAZE00000001	exon	91413516	91413572	+
GWHAAZE00000001	exon	91413707	91413889	+
GWHAAZE00000001	CDS	91409136	91409665	+
GWHAAZE00000001	CDS	91410623	91410752	+
GWHAAZE00000001	CDS	91411004	91411169	+
GWHAAZE00000001	CDS	91411251	91411369	+
GWHAAZE00000001	CDS	91411453	91411533	+
GWHAAZE00000001	CDS	91411928	91412014	+
GWHAAZE00000001	CDS	91412138	91412212	+
GWHAAZE00000001	CDS	91412339	91412407	+
GWHAAZE00000001	CDS	91412491	91412571	+
GWHAAZE00000001	CDS	91412671	91412805	+
GWHAAZE00000001	CDS	91413516	91413572	+
GWHAAZE00000001	CDS	91413707	91413889	+

Transcript Sequence
>GWHTAAZE003073 ATGGCGATCAAACCTCTTATCTCTCTCTCAATTATCTTCCTCCTTTGCTTCAACATCTTCTCGGTAACTCTCTCCAATGTACTCGGCGACACGGATCTCGAAGAGGATCTCACTTTCCTCGAAGATGACCAAAATGTCGCCGGCTCAACGGAACCTGGCCACGAGGCTCACGACTTCGAGAATTACGACTACCTAATGGATTCCTTCGGTGCCGACGGTGAGGAATCGGAATCGATGCCGGATATCGACGAGAGCAACGTTGTTGTGCTCAAGGAATCTAATTTCACCGAGTTTTTGGAGAAGAATCAGTACGTGATGGTGCAGTTCTACGCGCCGTGGTGCGGCCACTGCAAGGCACTGGCGCCGGAGTATGCTGCGGCAGCTACAGAGTTGAAGGGAGAAGCTGTGTTGGCGAAGGTCGACGCTACGGAGGAGAGTGAGCTGGCTCAGAAGTATGAGGTTGAGGGGTTCCCTACCTTGTATTTCTTTGTTAATGGTGTTTACAAGCCCTATCCTGATCAGAGGACTAAAGATTCTATTGTGTCTTGGGTGAAGAAGAAAACTGGACCTGGGTTATACAACTTAACATCAACAAAGGAGGCAGAATATATATTGGCAACAGAATCAAAATTGGTTTTGGGCTTTCTGGAAACTTTGATGGGTCCAGAGAGTGAGGAGCTTGCTGCTGCTTCAAAAATGGAAGATGGTGTCAGCTTCTACCAGACTGCTTGTCCGGATGTGGCAAGACTCTTTCACCTTGATCCCCAGGAGAAGCGTCCAGCCATCGTCTTGCTGAAAAAGGAGGCTGAAAAAATTAGCCACTTTGGGGGACAGTTTACCAAATCTGTGATTGCTGAATTTGTATTTGATAACAAGCTTCCTTTGGTCACTAATTTTACCAGGGAAAGTGGCCTGCTAATATTCGAGAATCCAATTAAGAAACAGTTGATACTTTTTACCACTTCGAGTGATTCTGAGAAGTTTATACCCATATTTCAAGAGGCAGCAAAAGAATTCAAAGGAAAGCTTATCTTTGTTTATGTCGAAATTGACAATGAAGATGTTGGGAAACCAGTTTCTGACTACTTTGGTGTTGCTGGAGATGCTCCAACCGTCCTTGCATACACAGGAAATGATGATCCCAAAAAGTTTTTATTGGATAGTGAATTGACTTTAAGCAGTGTTAAGTCATTTGCGGAGAATTTCCTAAAAGACAATCTTAAGCCTTTCTACAAGTCAGATCCAATTCCAGAGAAAAATGACGGGGATGTGAAGATAGTGGTGGGGAATAACTTTGAAGAAATTGTTTTGGACGAATCAAAGGATGTTCTTCTTGAGATATATGCTCCTTGGTGTGGGCATTGCCAATCACTAGAACCAATATATAATAAGCTTGGGAAATATTTGAGAGGCATTGATTCTCTAGTCATAGCCAAGATCGATGGGACTACCAATGAGCATCCTCGGGCCAAGGCTGATGGTTTCCCAACACTTCTTTTCTTCCCAGCTGGGAATAAGAGCTTTGACCCGATCACTGTTGAGACGGACCGTACAGTGGTAGCATTCTACAAATTCCTGAAGAAGCATGCATCCATTCCTTTCAAGCTCCAGAAACCTGCTTCTTCTTCGCCACAGAAAACCGAGTCATCCGATCATGCCAGTACTGACAAACATGCCAGCAGCATTAGTGGCGATTTGAAAGATGAATTGTGA

Network for GWHGAAZE003069

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.21	Thioredoxin	87	186	1.20E-30
PF13848.7	Thioredoxin_6	227	400	1.10E-22
PF00085.21	Thioredoxin	424	511	6.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09580	PDIA1, P4HB	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0045454	biological_process	cell redox homeostasis
GO:0016853	molecular_function	isomerase activity
GO:0003756	molecular_function	protein disulfide isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.982
	SRR3591706	second leaf	2.065
	SRR3591707	mature leaf	1.859
	SRR3591708	Shoot apex	3.858
	SRR3591709	Stem	0.973
	SRR3591710	White floral bud	3.451
	SRR3591711	White flower	0.609
	SRR3591712	Green floral bud	11.508
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	6.934
	SRR8316896	Juvenile bud stage	7.994
	SRR8316897	Juvenile bud stage	6.031
	SRR8316894	Third green stage	4.342
	SRR8316900	Third green stage	15.239
	SRR8316901	Third green stage	17.513
	SRR8316898	Complete white stage	1.719
	SRR8316899	Complete white stage	18.237
	SRR8316903	Complete white stage	3.836
	SRR8316902	Silver flowering stage	0.143
	SRR8316904	Silver flowering stage	0.479
	SRR8316905	Silver flowering stage	0.086
	SRR8316906	Gold flowering stage	0.216
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.479
SRP132670	SRR6706286	Control	13.514
	SRR6706287	Light intensity 50%	14.843
	SRR6706288	Light intensity 20%	16.730
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.922
	CNS0095593	Slightly white alabastrum(diploid) 2	8.283
	CNS0095594	Slightly white alabastrum(diploid) 3	6.184
	CNS0095595	Whole white alabastrum(diploid) 2	7.474
	CNS0095596	Whole white alabastrum(diploid) 3	9.440
	CNS0095597	Whole white alabastrum(diploid) 4	7.995
	CNS0095598	Silvery flower (diploied) 1	2.725
	CNS0095599	Silvery flower (diploied) 2	2.750
	CNS0095600	Silvery flower (diploied) 3	1.015
	CNS0095601	Golden flower (diploid) 1	1.662
	CNS0095602	Golden flower (diploid) 2	1.293
	CNS0095603	Golden flower (diploid) 3	0.743
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.908
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.529
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.884
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.108
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.354
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.949
	CNS0095610	Silvery flower (tetraploid) 1	2.288
	CNS0095611	Silvery flower (tetraploid) 2	3.399
	CNS0095612	Silvery flower (tetraploid) 3	2.291
	CNS0095613	Golden flower (tetraploid) 1	0.161
	CNS0095614	Golden flower (tetraploid) 2	2.687
	CNS0095615	Golden flower (tetraploid) 3	0.277
CRA001975	CRR073297	Stem 1	12.415
	CRR073298	Stem 2	12.381
	CRR073299	Stem 3	9.998
	CRR073300	Leaf 1	21.468
	CRR073301	Leaf 2	19.256
	CRR073302	Leaf 3	17.893
	CRR073303	Juvenile bud 1	19.940
	CRR073304	Juvenile bud 2	19.814
	CRR073305	Juvenile bud 3	13.498
	CRR073306	Third green 1	0.597
	CRR073307	Third green 2	0.269
	CRR073308	Third green 3	0.841
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.047
	CRR073311	Second white 3	0.062
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.115
	CRR073315	Gold flowering 1	0.262
	CRR073316	Gold flowering 2	0.543
	CRR073317	Gold flowering 3	0.624
	CRR073318	Tawny withering 1	1.789
	CRR073319	Tawny withering 2	1.679
	CRR073320	Tawny withering 3	0.624