Detail information of GWHGAAZE003034


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13609.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068UZD9|A0A068UZD9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313|EMBL:CDP13609.1}
TAIR10AT1G79090.20Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9050200990514955-
GWHAAZE00000001mRNA9050200990514955-
GWHAAZE00000001exon9051486790514955-
GWHAAZE00000001exon9051444190514510-
GWHAAZE00000001exon9051423790514296-
GWHAAZE00000001exon9051360890513722-
GWHAAZE00000001exon9051262290512737-
GWHAAZE00000001exon9051237690512500-
GWHAAZE00000001exon9050941890509509-
GWHAAZE00000001exon9050844690508591-
GWHAAZE00000001exon9050777590507816-
GWHAAZE00000001exon9050654690506599-
GWHAAZE00000001exon9050495490505017-
GWHAAZE00000001exon9050396090504110-
GWHAAZE00000001exon9050200990503878-
GWHAAZE00000001CDS9051486790514955-
GWHAAZE00000001CDS9051444190514510-
GWHAAZE00000001CDS9051423790514296-
GWHAAZE00000001CDS9051360890513722-
GWHAAZE00000001CDS9051262290512737-
GWHAAZE00000001CDS9051237690512500-
GWHAAZE00000001CDS9050941890509509-
GWHAAZE00000001CDS9050844690508591-
GWHAAZE00000001CDS9050777590507816-
GWHAAZE00000001CDS9050654690506599-
GWHAAZE00000001CDS9050495490505017-
GWHAAZE00000001CDS9050396090504110-
GWHAAZE00000001CDS9050200990503878-
Transcript Sequence

Network for GWHGAAZE003034

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09767.10DUF2053281634.20E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12617PATL1, PAT1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.735
SRR3591706second leaf27.565
SRR3591707mature leaf31.524
SRR3591708Shoot apex38.485
SRR3591709Stem35.805
SRR3591710White floral bud38.150
SRR3591711White flower40.248
SRR3591712Green floral bud41.329
SRR3591713Yellow flower32.637
SRP173429 SRR8316895Juvenile bud stage 17.512
SRR8316896Juvenile bud stage 22.169
SRR8316897Juvenile bud stage 10.917
SRR8316894Third green stage 12.090
SRR8316900Third green stage 29.635
SRR8316901Third green stage 26.443
SRR8316898Complete white stage 9.167
SRR8316899Complete white stage 32.740
SRR8316903Complete white stage 20.367
SRR8316902Silver flowering stage10.207
SRR8316904Silver flowering stage16.036
SRR8316905Silver flowering stage8.181
SRR8316906Gold flowering stage 26.064
SRR8316907Gold flowering stage 23.629
SRR8316908Gold flowering stage 26.108
SRP132670SRR6706286Control41.846
SRR6706287Light intensity 50%38.812
SRR6706288Light intensity 20%39.039
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.768
CNS0095593Slightly white alabastrum(diploid) 217.792
CNS0095594Slightly white alabastrum(diploid) 316.579
CNS0095595Whole white alabastrum(diploid) 219.778
CNS0095596Whole white alabastrum(diploid) 320.039
CNS0095597Whole white alabastrum(diploid) 419.657
CNS0095598Silvery flower (diploied) 120.678
CNS0095599Silvery flower (diploied) 214.920
CNS0095600Silvery flower (diploied) 335.250
CNS0095601Golden flower (diploid) 117.153
CNS0095602Golden flower (diploid) 241.339
CNS0095603Golden flower (diploid) 336.995
CNS0095604Slightly white alabastrum(tetraploid) 126.692
CNS0095605Slightly white alabastrum(tetraploid) 224.066
CNS0095606Slightly white alabastrum(tetraploid) 338.620
CNS0095607Whole white alabastrum(tetraploid) 120.212
CNS0095608Whole white alabastrum(tetraploid) 216.372
CNS0095609Whole white alabastrum(tetraploid) 328.767
CNS0095610Silvery flower (tetraploid) 131.570
CNS0095611Silvery flower (tetraploid) 235.796
CNS0095612Silvery flower (tetraploid) 326.081
CNS0095613Golden flower (tetraploid) 114.992
CNS0095614Golden flower (tetraploid) 228.839
CNS0095615Golden flower (tetraploid) 332.155
CRA001975CRR073297Stem 148.313
CRR073298Stem 243.994
CRR073299Stem 346.693
CRR073300Leaf 146.651
CRR073301Leaf 242.593
CRR073302Leaf 337.243
CRR073303Juvenile bud 140.554
CRR073304Juvenile bud 234.433
CRR073305Juvenile bud 352.192
CRR073306Third green 117.787
CRR073307Third green 215.632
CRR073308Third green 318.609
CRR073309Second white 117.606
CRR073310Second white 217.176
CRR073311Second white 315.050
CRR073312Silver flowering 113.938
CRR073313Silver flowering 217.304
CRR073314Silver flowering 314.379
CRR073315Gold flowering 117.663
CRR073316Gold flowering 226.186
CRR073317Gold flowering 325.831
CRR073318Tawny withering 137.827
CRR073319Tawny withering 229.684
CRR073320Tawny withering 332.760