Gene detail

Detail information of GWHGAAZE003033

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011038105.1	0	PREDICTED: BTB/POZ domain-containing protein At1g04390 isoform X2 [Populus euphratica]
Swissprot	tr\|P93820\|Y1439_ARATH	0	BTB/POZ domain-containing protein At1g04390
trEMBL	tr\|S5ZYZ0\|S5ZYZ0_SOLTU	0	BTB/POZ domain-containing protein 1 {ECO:0000313\|EMBL:AGT37251.1}
TAIR10	AT1G04390.1	1E-109	BTB/POZ domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	90483635	90490264	+
GWHAAZE00000001	mRNA	90483635	90490264	+
GWHAAZE00000001	exon	90483635	90483738	+
GWHAAZE00000001	exon	90485107	90485233	+
GWHAAZE00000001	exon	90486406	90486913	+
GWHAAZE00000001	exon	90487040	90487167	+
GWHAAZE00000001	exon	90487256	90487701	+
GWHAAZE00000001	exon	90487863	90488960	+
GWHAAZE00000001	exon	90489281	90489433	+
GWHAAZE00000001	exon	90489820	90490264	+
GWHAAZE00000001	CDS	90483635	90483738	+
GWHAAZE00000001	CDS	90485107	90485233	+
GWHAAZE00000001	CDS	90486406	90486913	+
GWHAAZE00000001	CDS	90487040	90487167	+
GWHAAZE00000001	CDS	90487256	90487701	+
GWHAAZE00000001	CDS	90487863	90488960	+
GWHAAZE00000001	CDS	90489281	90489433	+
GWHAAZE00000001	CDS	90489820	90490264	+

Transcript Sequence
>GWHTAAZE003037 ATGAAATCATCGGCGAAGAAAGTTGCAGAAAATAATCGTGTAATCACCGCTCACATCTCCACACTCCACCAACGCCTTTATCACGCCCTCAACCTTGGTCTCAGATGCAACAGTGGCAGCAAATGGAACTGGCAATGTACAGATATTGAGATACAGAGACTCGTGGTTCGCTCAACTGATGCATTTCTTGATTGTATTTCTAGTGAGACCGCAAATCACCCTATTGTTAAGGATTCCGTGACTGATATGGTTGGGGCATTGGACTTCATTCTTCAATTTAAAAATGAATCCATATTAAGGTTGGCATCACACGTGGCCTTAAAGATGGTCAATGTTCTACCCAATTCCATACTTAAAGCACACATTTTGGATCTTGTTCATCCTTTGTCGTCTTTGTTATCTTCCCATCAATCTCAAGTTTCTGTTTCATGTGCTGCTGCTTTGAGTTCGATCCTAGTAAATTTGAGCAGTAAAAGTGAGAGGGAAGTATGGGAGATTTTAGAAGAAACAAAGGCAGTTATTAACATCATCGGCAATATACAGGATTTTTCTGGTGGGCATAAGCCAGATGAATATCTTCAGGAGATGGTTTCTCTTCTAAGTCAAATACTGTGGCAATGGCCTGCCTCTAGATTTTTGGTTTGGAACAATGCTAAATTAATGGAAGCATTAGGATCCATCAGTCTCAAGCCAGATTTTTCTGTTAAGGTGATTGTTATGCAGTTGTATTCTGCCATAGCTTTATGTAGTTATGGTGTGAAGAAGCTTTTAAAAGATGGAGAATCCCTTCTACAAATGATGGTGCATTGCATGAGTGGCACTCCTCCTATTCAGCTCGAGGGATTCAAACTTGCTCAATCTTTTGCGATGAGTGAAGAAGGATGTTCAACAATGATGAAAATGTCTTGCGAGCCACTTATCAAAGCCATAATTGGTGGAATGAGCCAGTGGAGCTTGCAATCTGGGAAGCTTGTTAAGGGTCAGATGCCTTTGTTAGTGGAGGTCAGTCGTTTGTGTATGATCATCACTCGTTGGGCAGGGGAGCATCACACTTATTTTTGGAAACTAGGAGTTGACAGAGTTCTGCTTAATCTCCTTCTCAACTTTCATGAAACAAATCAGCCTTGGAATTCCGTACCATTAATAGAGCAGATATCCATAGCAGCGGAGGGTCTAAATATGAATGTTCATCTTCCTCTGCGACCATATATATGGGAAATTCTTGGATGTCTTGCAGCACACTGTCCAGAAGATCTCAACCCCAAGAAGCATGGAAGTGAAGCTAACATCAACTTGCTTATTGCATGTGCATGCTTAACCTTAGTGGATACGATTCATACTTCGCTTCAAATTTGTCAAAATGATAATGCTTCTAGATTTGGGAACGAATCAGCATGCAGAGCAGTTCTTCTTATGATTTATTCTCCCTGCAAGTACATTGCATCACAAGCCAGACTTGTACTGTCCAAAATACTGAAACCAAATGGAAAGGAGAATCTCAAATGCATATTGAATACCCTTGATGCCGCATCATCTGGAAACAAATTCGGAATGCCAGATAACGTTCAAATCGTCGTAAAATTAATGGCTTTGGCGTGTTATTCAGGTCTGACTCATTACCGGAAACATCTTATAGAAAGTCAAGGGATAAAGACACTTTTGGCCTTTATAAAGTGGTGGTTAAGCAGTCCAGTCCGCATGAAAAGGTTTAATGTGTCACGTCATTTGTATAATTCTTTCAACAACAAGACTTGTTGTTATGACCATGCAGAAGATTGGGAGGGCGAGGACATGCTTTTGCTTTTCAGTCTCTGGGGACTGGCTGAATTGATTCGCCATTCTGGATATGTGGAAAATCAAGTAGGCTCATTTGCAAGTCAGATAGATTTCAATGAAGCTGAATTAATAAATTTACTTGAGGGGATCTGCACTGGCTCTTATGCTCCTGGGCCTAGATGGTATGCCACTTACATTCTTAGTTGCCTTGGACTTTATGGTTTTCCGTGTGAACATGGAAAAAGGATTGGGAAAGCACTTGATGAGAAAGAACATACCGATTTGAAAATTGTGCTTGCAAACCAAGAAGAGTATTTAAGAGTCCACGGCATCATTGTTATGGTTCGGTGTCCGTCATTGCTGCCTCTTAAGGAGAAAACATCTAGTAGCTCAATGAAGGAAGTTTGCCTATCTGCTCATGTGGATCAGCAAGCGTTGTTGAAGCTGTTGGAATTCGTTTACTCGGGGTATTTACAAGCAGAGGAAGACCTTGTGAAGAAATTGAAAGTTCTTGCAAGGCATTGTAAACTGCAACCCCTACTTCAAATGCTTCATAGGAGAAGTCCAAAATGGAACAATCCTTTCCCAAGATTTGATCTTGCCGTCGCCCTGGGGCCAGCTGGACATCATTTCTCGGACGTTATCTTGGAAGCTAAAGCAGATGAACAGGCAGATTGGGCATGCAATATATGCTCTCTATTGGTGCCGCATATGCATGTTCATAAAGTTGTGTTGTGTTCAAGTTGTGATTATTTGCGTGCTTTGTTTCAGTCTGGAATGCAAGAAAGTCGGTCACAAAGCATAGAGGTCCCCGTCAGTTGGGAAACATTGCGTAAGATAGTTAATTGGTTTTATTTGGACAAGCTTCCAAAGCCAGTGTCGGGTTGTTTATGGAACAATCTGGATGCAGAGGAGAAACTAAAGGAACTTCAACCATATGTAGAGCTGTGTTGGCTTTCTCAATTCTGGCTATTGGAAGACCTTCATGAAGAGTGCACGGGAGTGATCATATCCTGGTTAGGTTCCGCTAGAGAATTGTCTGTGAAAATACTCCAAATTGCGGCTAATTTCTCCCTGTGGAAGCTGGCCGAAGTTGCAGCAGCTTACATGGCCCCTTCGTACCAACGCCTACGCAATTCTGGTGGGCTTGAAGCACTGGATGAGGAGCTCGTTGAAATGGTCCGGGGTGCCTCTGTTCGACTTTCTCGAGAGGGTGGTCAGCACCCTGGTTGA

Network for GWHGAAZE003033

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.32	BTB	829	896	6.00E-08

Protein Sequence

>GWHPAAZE003035
MKSSAKKVAENNRVITAHISTLHQRLYHALNLGLRCNSGSKWNWQCTDIEIQRLVVRSTDAFLDCISSETANHPIVKDSVTDMVGALDFILQFKNESILRLASHVALKMVNVLPNSILKAHILDLVHPLSSLLSSHQSQVSVSCAAALSSILVNLSSKSEREVWEILEETKAVINIIGNIQDFSGGHKPDEYLQEMVSLLSQILWQWPASRFLVWNNAKLMEALGSISLKPDFSVKVIVMQLYSAIALCSYGVKKLLKDGESLLQMMVHCMSGTPPIQLEGFKLAQSFAMSEEGCSTMMKMSCEPLIKAIIGGMSQWSLQSGKLVKGQMPLLVEVSRLCMIITRWAGEHHTYFWKLGVDRVLLNLLLNFHETNQPWNSVPLIEQISIAAEGLNMNVHLPLRPYIWEILGCLAAHCPEDLNPKKHGSEANINLLIACACLTLVDTIHTSLQICQNDNASRFGNESACRAVLLMIYSPCKYIASQARLVLSKILKPNGKENLKCILNTLDAASSGNKFGMPDNVQIVVKLMALACYSGLTHYRKHLIESQGIKTLLAFIKWWLSSPVRMKRFNVSRHLYNSFNNKTCCYDHAEDWEGEDMLLLFSLWGLAELIRHSGYVENQVGSFASQIDFNEAELINLLEGICTGSYAPGPRWYATYILSCLGLYGFPCEHGKRIGKALDEKEHTDLKIVLANQEEYLRVHGIIVMVRCPSLLPLKEKTSSSSMKEVCLSAHVDQQALLKLLEFVYSGYLQAEEDLVKKLKVLARHCKLQPLLQMLHRRSPKWNNPFPRFDLAVALGPAGHHFSDVILEAKADEQADWACNICSLLVPHMHVHKVVLCSSCDYLRALFQSGMQESRSQSIEVPVSWETLRKIVNWFYLDKLPKPVSGCLWNNLDAEEKLKELQPYVELCWLSQFWLLEDLHEECTGVIISWLGSARELSVKILQIAANFSLWKLAEVAAAYMAPSYQRLRNSGGLEALDEELVEMVRGASVRLSREGGQHPG

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.787
	SRR3591706	second leaf	3.362
	SRR3591707	mature leaf	6.109
	SRR3591708	Shoot apex	3.628
	SRR3591709	Stem	5.940
	SRR3591710	White floral bud	4.934
	SRR3591711	White flower	7.086
	SRR3591712	Green floral bud	6.048
	SRR3591713	Yellow flower	5.351
SRP173429	SRR8316895	Juvenile bud stage	3.083
	SRR8316896	Juvenile bud stage	3.683
	SRR8316897	Juvenile bud stage	1.832
	SRR8316894	Third green stage	1.514
	SRR8316900	Third green stage	5.038
	SRR8316901	Third green stage	4.835
	SRR8316898	Complete white stage	2.068
	SRR8316899	Complete white stage	5.486
	SRR8316903	Complete white stage	4.503
	SRR8316902	Silver flowering stage	2.728
	SRR8316904	Silver flowering stage	4.928
	SRR8316905	Silver flowering stage	1.952
	SRR8316906	Gold flowering stage	6.307
	SRR8316907	Gold flowering stage	5.070
	SRR8316908	Gold flowering stage	4.974
SRP132670	SRR6706286	Control	2.549
	SRR6706287	Light intensity 50%	2.647
	SRR6706288	Light intensity 20%	2.585
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.219
	CNS0095593	Slightly white alabastrum(diploid) 2	2.421
	CNS0095594	Slightly white alabastrum(diploid) 3	2.134
	CNS0095595	Whole white alabastrum(diploid) 2	2.586
	CNS0095596	Whole white alabastrum(diploid) 3	3.229
	CNS0095597	Whole white alabastrum(diploid) 4	3.645
	CNS0095598	Silvery flower (diploied) 1	3.967
	CNS0095599	Silvery flower (diploied) 2	3.030
	CNS0095600	Silvery flower (diploied) 3	7.668
	CNS0095601	Golden flower (diploid) 1	2.967
	CNS0095602	Golden flower (diploid) 2	6.926
	CNS0095603	Golden flower (diploid) 3	6.555
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.746
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.486
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.021
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.411
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.070
	CNS0095610	Silvery flower (tetraploid) 1	6.101
	CNS0095611	Silvery flower (tetraploid) 2	6.071
	CNS0095612	Silvery flower (tetraploid) 3	6.341
	CNS0095613	Golden flower (tetraploid) 1	2.600
	CNS0095614	Golden flower (tetraploid) 2	4.109
	CNS0095615	Golden flower (tetraploid) 3	5.234
CRA001975	CRR073297	Stem 1	3.527
	CRR073298	Stem 2	2.633
	CRR073299	Stem 3	2.232
	CRR073300	Leaf 1	3.232
	CRR073301	Leaf 2	2.774
	CRR073302	Leaf 3	1.991
	CRR073303	Juvenile bud 1	2.462
	CRR073304	Juvenile bud 2	1.370
	CRR073305	Juvenile bud 3	2.754
	CRR073306	Third green 1	1.544
	CRR073307	Third green 2	0.976
	CRR073308	Third green 3	1.622
	CRR073309	Second white 1	2.070
	CRR073310	Second white 2	2.737
	CRR073311	Second white 3	3.140
	CRR073312	Silver flowering 1	2.899
	CRR073313	Silver flowering 2	2.122
	CRR073314	Silver flowering 3	2.096
	CRR073315	Gold flowering 1	2.150
	CRR073316	Gold flowering 2	2.842
	CRR073317	Gold flowering 3	1.738
	CRR073318	Tawny withering 1	1.841
	CRR073319	Tawny withering 2	2.860
	CRR073320	Tawny withering 3	1.823