Gene detail

Detail information of GWHGAAZE003029

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004288592.1	0	PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like [Fragaria vesca subsp. vesca]
COG	YP_005068377.1	2E-151	recombination protein RecA
Swissprot	tr\|Q39199\|RECAC_ARATH	0	DNA repair protein recA homolog 1, chloroplastic (Precursor)
trEMBL	tr\|M5WSD7\|M5WSD7_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16727.1}
TAIR10	AT1G79050.1	8E-159	recA DNA recombination family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	90372617	90376132	-
GWHAAZE00000001	mRNA	90372617	90376132	-
GWHAAZE00000001	exon	90372617	90372727	-
GWHAAZE00000001	exon	90373088	90373160	-
GWHAAZE00000001	exon	90373475	90373551	-
GWHAAZE00000001	exon	90373632	90373694	-
GWHAAZE00000001	exon	90373838	90373894	-
GWHAAZE00000001	exon	90374008	90374112	-
GWHAAZE00000001	exon	90374267	90374392	-
GWHAAZE00000001	exon	90374484	90374569	-
GWHAAZE00000001	exon	90374678	90374807	-
GWHAAZE00000001	exon	90375182	90375244	-
GWHAAZE00000001	exon	90375729	90375804	-
GWHAAZE00000001	exon	90376023	90376132	-
GWHAAZE00000001	CDS	90376023	90376132	-
GWHAAZE00000001	CDS	90375729	90375804	-
GWHAAZE00000001	CDS	90375182	90375244	-
GWHAAZE00000001	CDS	90374678	90374807	-
GWHAAZE00000001	CDS	90374484	90374569	-
GWHAAZE00000001	CDS	90374267	90374392	-
GWHAAZE00000001	CDS	90374008	90374112	-
GWHAAZE00000001	CDS	90373838	90373894	-
GWHAAZE00000001	CDS	90373632	90373694	-
GWHAAZE00000001	CDS	90373475	90373551	-
GWHAAZE00000001	CDS	90373088	90373160	-
GWHAAZE00000001	CDS	90372617	90372727	-

Transcript Sequence
>GWHTAAZE003033 ATGATCATCATAGTCCAGCAAAAAGCTTTGGAAGCAGCAATGAATGACATAAATAGCTCATTTGGAAAAGGAAGTGTTACTAGATTGGGCAGTGCTGGCGGAGCTCTAGTTGAAACTTTTCCAAGTGGCTGTTTGACATTAGACCTTGCCTTAGGAGGCGGCCTTCCCAAAGGCAGAATTGTAGAGATATATGGGCCAGAAAGTAGTGGAAAGACCACCTTAGCACTCCATGCAATTGCTGAAGTTCAGAAGCTAGGAGGCAACGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCATCTTATTCAAAAGCATTGGGTGTGGATGTAGAAAATTTGATTGTATGCCAACCCGATAATGGGGAAATGGCACTAGAGATTGCAGATCGTTTGTGTAGATCTGGTGCCATTGATCTCATTTGTGTTGACTCTGTCTCAGCACTCACTCCACGAGCTGAGATTGAAGGGGAAATTGGAATGCAACAAATGGGTTTGCAAGCACGTCTTATGAGCCAAGCTCTTCGTAAAATGTCGGGGAATGCGTCAAAAGCTGGTTGCACTCTTATTTTTCTGAATCAAATAAGACACAAGATTGGTGTTTATTATGGAAACCCCGAAGTCACCAGTGGGGGAATTGCTTTAAAGTTCTTTGCATCACTTCGACTTGAGATACGTGCTACAGGGAAAATAAAATCTGTTAAAGGAGATGAGGATGTTGGGCTTAAGGTTCGTGTAAGAGTTCAGAAGAGCAAGGTGTCAAGGCCATACAAGCAAGCTGAGTTTGAAATAATATTTGGAGAGGGAATCAGCATACTGGGATGCGTTTTGGATTGTGCTGAAATGATGGACGTTGTGTTGAAGAAAGGCTCTTGGTATAGCTATGGAGATCATAGGTTGGGACAGGGAAGAGACAGAGCACTACAATACTTGCGAGAAAACCCTCTTCTTTGCGATGAAATAGAGAAGATTGTTCGATCTGTCATGATAGATGGGACTGGACAAATAGGCTCTTCTTTCATGAAGTCTTTGCCGGCCCAGCATGAAGAAGAAGAAGATAATATCGAGGAGCTTCACTAA

Network for GWHGAAZE003029

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00154.22	RecA	8	270	8.30E-119

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03553	recA	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0006259	biological_process	DNA metabolic process
GO:0003677	molecular_function	DNA binding
GO:0005524	molecular_function	ATP binding
GO:0008094	molecular_function	DNA-dependent ATPase activity
GO:0003697	molecular_function	single-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.339
	SRR3591706	second leaf	33.282
	SRR3591707	mature leaf	23.736
	SRR3591708	Shoot apex	53.064
	SRR3591709	Stem	22.052
	SRR3591710	White floral bud	27.879
	SRR3591711	White flower	27.425
	SRR3591712	Green floral bud	33.093
	SRR3591713	Yellow flower	28.040
SRP173429	SRR8316895	Juvenile bud stage	25.634
	SRR8316896	Juvenile bud stage	28.590
	SRR8316897	Juvenile bud stage	17.090
	SRR8316894	Third green stage	14.190
	SRR8316900	Third green stage	43.812
	SRR8316901	Third green stage	35.290
	SRR8316898	Complete white stage	17.171
	SRR8316899	Complete white stage	47.668
	SRR8316903	Complete white stage	22.028
	SRR8316902	Silver flowering stage	16.046
	SRR8316904	Silver flowering stage	24.005
	SRR8316905	Silver flowering stage	10.581
	SRR8316906	Gold flowering stage	39.998
	SRR8316907	Gold flowering stage	40.306
	SRR8316908	Gold flowering stage	46.646
SRP132670	SRR6706286	Control	33.713
	SRR6706287	Light intensity 50%	33.715
	SRR6706288	Light intensity 20%	38.475
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.135
	CNS0095593	Slightly white alabastrum(diploid) 2	21.539
	CNS0095594	Slightly white alabastrum(diploid) 3	22.859
	CNS0095595	Whole white alabastrum(diploid) 2	23.909
	CNS0095596	Whole white alabastrum(diploid) 3	26.425
	CNS0095597	Whole white alabastrum(diploid) 4	20.288
	CNS0095598	Silvery flower (diploied) 1	28.791
	CNS0095599	Silvery flower (diploied) 2	24.441
	CNS0095600	Silvery flower (diploied) 3	33.062
	CNS0095601	Golden flower (diploid) 1	25.743
	CNS0095602	Golden flower (diploid) 2	30.068
	CNS0095603	Golden flower (diploid) 3	26.206
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.247
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.267
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.025
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.374
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.969
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.123
	CNS0095610	Silvery flower (tetraploid) 1	53.528
	CNS0095611	Silvery flower (tetraploid) 2	48.702
	CNS0095612	Silvery flower (tetraploid) 3	52.178
	CNS0095613	Golden flower (tetraploid) 1	29.753
	CNS0095614	Golden flower (tetraploid) 2	35.161
	CNS0095615	Golden flower (tetraploid) 3	16.798
CRA001975	CRR073297	Stem 1	34.588
	CRR073298	Stem 2	31.041
	CRR073299	Stem 3	29.928
	CRR073300	Leaf 1	32.202
	CRR073301	Leaf 2	30.049
	CRR073302	Leaf 3	27.560
	CRR073303	Juvenile bud 1	26.573
	CRR073304	Juvenile bud 2	28.251
	CRR073305	Juvenile bud 3	25.832
	CRR073306	Third green 1	13.093
	CRR073307	Third green 2	9.181
	CRR073308	Third green 3	10.242
	CRR073309	Second white 1	22.692
	CRR073310	Second white 2	17.690
	CRR073311	Second white 3	20.817
	CRR073312	Silver flowering 1	17.366
	CRR073313	Silver flowering 2	15.189
	CRR073314	Silver flowering 3	14.791
	CRR073315	Gold flowering 1	34.560
	CRR073316	Gold flowering 2	56.212
	CRR073317	Gold flowering 3	33.647
	CRR073318	Tawny withering 1	15.929
	CRR073319	Tawny withering 2	15.816
	CRR073320	Tawny withering 3	19.146