Detail information of GWHGAAZE003006


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009620231.14.9068E-104PREDICTED: ubiquitin-conjugating enzyme E2 28 [Nicotiana tomentosiformis]
COGYP_008797956.11E-23ubiquitin-conjugating enzyme E2-like protein
Swissprottr|P35135|UBC4_SOLLC2E-103Ubiquitin-conjugating enzyme E2-17 kDa
trEMBLtr|M1C0T1|M1C0T1_SOLTU3E-104Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400057302}
TAIR10AT1G64230.27E-81ubiquitin-conjugating enzyme 28

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8994163089944983+
GWHAAZE00000001mRNA8994163089944983+
GWHAAZE00000001exon8994163089941699+
GWHAAZE00000001exon8994209789942224+
GWHAAZE00000001exon8994463289944736+
GWHAAZE00000001exon8994484089944983+
GWHAAZE00000001CDS8994163089941699+
GWHAAZE00000001CDS8994209789942224+
GWHAAZE00000001CDS8994463289944736+
GWHAAZE00000001CDS8994484089944983+
Transcript Sequence

Network for GWHGAAZE003006

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con51411.20E-53
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06689UBE2D, UBC4, UBC5 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf284.244
SRR3591706second leaf131.327
SRR3591707mature leaf270.457
SRR3591708Shoot apex176.065
SRR3591709Stem439.984
SRR3591710White floral bud523.179
SRR3591711White flower749.610
SRR3591712Green floral bud365.589
SRR3591713Yellow flower824.664
SRP173429 SRR8316895Juvenile bud stage 322.496
SRR8316896Juvenile bud stage 467.221
SRR8316897Juvenile bud stage 228.199
SRR8316894Third green stage 133.873
SRR8316900Third green stage 394.896
SRR8316901Third green stage 442.467
SRR8316898Complete white stage 276.547
SRR8316899Complete white stage 902.568
SRR8316903Complete white stage 379.525
SRR8316902Silver flowering stage369.492
SRR8316904Silver flowering stage397.113
SRR8316905Silver flowering stage192.510
SRR8316906Gold flowering stage 659.546
SRR8316907Gold flowering stage 686.730
SRR8316908Gold flowering stage 632.291
SRP132670SRR6706286Control536.573
SRR6706287Light intensity 50%454.405
SRR6706288Light intensity 20%488.642
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1432.405
CNS0095593Slightly white alabastrum(diploid) 2435.551
CNS0095594Slightly white alabastrum(diploid) 3441.305
CNS0095595Whole white alabastrum(diploid) 2386.790
CNS0095596Whole white alabastrum(diploid) 3346.317
CNS0095597Whole white alabastrum(diploid) 4402.580
CNS0095598Silvery flower (diploied) 1633.631
CNS0095599Silvery flower (diploied) 2625.468
CNS0095600Silvery flower (diploied) 3773.919
CNS0095601Golden flower (diploid) 1649.750
CNS0095602Golden flower (diploid) 2793.940
CNS0095603Golden flower (diploid) 3733.436
CNS0095604Slightly white alabastrum(tetraploid) 1263.846
CNS0095605Slightly white alabastrum(tetraploid) 2258.437
CNS0095606Slightly white alabastrum(tetraploid) 3256.101
CNS0095607Whole white alabastrum(tetraploid) 1268.171
CNS0095608Whole white alabastrum(tetraploid) 2258.257
CNS0095609Whole white alabastrum(tetraploid) 3284.742
CNS0095610Silvery flower (tetraploid) 1710.162
CNS0095611Silvery flower (tetraploid) 2876.815
CNS0095612Silvery flower (tetraploid) 3607.261
CNS0095613Golden flower (tetraploid) 1646.299
CNS0095614Golden flower (tetraploid) 2630.226
CNS0095615Golden flower (tetraploid) 3775.708
CRA001975CRR073297Stem 1313.015
CRR073298Stem 2305.074
CRR073299Stem 3357.142
CRR073300Leaf 1376.981
CRR073301Leaf 2438.058
CRR073302Leaf 3395.449
CRR073303Juvenile bud 1518.833
CRR073304Juvenile bud 2459.486
CRR073305Juvenile bud 3525.744
CRR073306Third green 1429.489
CRR073307Third green 2477.858
CRR073308Third green 3410.781
CRR073309Second white 1559.703
CRR073310Second white 2390.235
CRR073311Second white 3315.442
CRR073312Silver flowering 1505.261
CRR073313Silver flowering 2578.596
CRR073314Silver flowering 3421.980
CRR073315Gold flowering 1271.613
CRR073316Gold flowering 2309.195
CRR073317Gold flowering 3275.704
CRR073318Tawny withering 1331.159
CRR073319Tawny withering 2405.150
CRR073320Tawny withering 3261.874