Detail information of GWHGAAZE003003


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010644644.10PREDICTED: proteasome activator subunit 4 [Vitis vinifera]
Swissprottr|F4JC97|PSME4_ARATH0Proteasome activator subunit 4
trEMBLtr|D7UAP4|D7UAP4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI39809.3}
TAIR10AT3G13330.10proteasome activating protein 200

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8986904189886435-
GWHAAZE00000001mRNA8986904189886435-
GWHAAZE00000001exon8988616289886435-
GWHAAZE00000001exon8988507489885176-
GWHAAZE00000001exon8988488389884995-
GWHAAZE00000001exon8988424789884369-
GWHAAZE00000001exon8988393589884036-
GWHAAZE00000001exon8988368089883845-
GWHAAZE00000001exon8988339689883512-
GWHAAZE00000001exon8988322989883296-
GWHAAZE00000001exon8988303689883137-
GWHAAZE00000001exon8988273789882953-
GWHAAZE00000001exon8988235289882585-
GWHAAZE00000001exon8988213189882258-
GWHAAZE00000001exon8988166489881781-
GWHAAZE00000001exon8988134489881562-
GWHAAZE00000001exon8988110789881262-
GWHAAZE00000001exon8988002389880099-
GWHAAZE00000001exon8987819789878405-
GWHAAZE00000001exon8987787589878091-
GWHAAZE00000001exon8987769689877775-
GWHAAZE00000001exon8987748089877597-
GWHAAZE00000001exon8987721089877380-
GWHAAZE00000001exon8987656389876731-
GWHAAZE00000001exon8987644189876484-
GWHAAZE00000001exon8987629289876334-
GWHAAZE00000001exon8987605989876204-
GWHAAZE00000001exon8987545889875552-
GWHAAZE00000001exon8987431489875212-
GWHAAZE00000001exon8987368689873943-
GWHAAZE00000001exon8987350989873604-
GWHAAZE00000001exon8987237489872552-
GWHAAZE00000001exon8987201889872099-
GWHAAZE00000001exon8987115489871278-
GWHAAZE00000001exon8987035589870447-
GWHAAZE00000001exon8986935189869561-
GWHAAZE00000001exon8986904189869270-
GWHAAZE00000001five_prime_UTR8988632389886435-
GWHAAZE00000001CDS8988616289886322-
GWHAAZE00000001CDS8988507489885176-
GWHAAZE00000001CDS8988488389884995-
GWHAAZE00000001CDS8988424789884369-
GWHAAZE00000001CDS8988393589884036-
GWHAAZE00000001CDS8988368089883845-
GWHAAZE00000001CDS8988339689883512-
GWHAAZE00000001CDS8988322989883296-
GWHAAZE00000001CDS8988303689883137-
GWHAAZE00000001CDS8988273789882953-
GWHAAZE00000001CDS8988235289882585-
GWHAAZE00000001CDS8988213189882258-
GWHAAZE00000001CDS8988166489881781-
GWHAAZE00000001CDS8988134489881562-
GWHAAZE00000001CDS8988110789881262-
GWHAAZE00000001CDS8988002389880099-
GWHAAZE00000001CDS8987819789878405-
GWHAAZE00000001CDS8987787589878091-
GWHAAZE00000001CDS8987769689877775-
GWHAAZE00000001CDS8987748089877597-
GWHAAZE00000001CDS8987721089877380-
GWHAAZE00000001CDS8987656389876731-
GWHAAZE00000001CDS8987644189876484-
GWHAAZE00000001CDS8987629289876334-
GWHAAZE00000001CDS8987605989876204-
GWHAAZE00000001CDS8987545889875552-
GWHAAZE00000001CDS8987431489875212-
GWHAAZE00000001CDS8987368689873943-
GWHAAZE00000001CDS8987350989873604-
GWHAAZE00000001CDS8987237489872552-
GWHAAZE00000001CDS8987201889872099-
GWHAAZE00000001CDS8987115489871278-
GWHAAZE00000001CDS8987035589870447-
GWHAAZE00000001CDS8986935189869561-
GWHAAZE00000001CDS8986922989869270-
GWHAAZE00000001three_prime_UTR8986904189869228-
Transcript Sequence

Network for GWHGAAZE003003

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16507.6BLM10_mid3105036.20E-29
PF16507.6BLM10_mid5078256.80E-18
PF11919.9DUF3437172217957.50E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06699PSME4 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.114
SRR3591706second leaf26.185
SRR3591707mature leaf29.410
SRR3591708Shoot apex18.100
SRR3591709Stem29.758
SRR3591710White floral bud29.296
SRR3591711White flower60.141
SRR3591712Green floral bud30.330
SRR3591713Yellow flower42.706
SRP173429 SRR8316895Juvenile bud stage 18.421
SRR8316896Juvenile bud stage 28.142
SRR8316897Juvenile bud stage 12.129
SRR8316894Third green stage 13.632
SRR8316900Third green stage 28.016
SRR8316901Third green stage 26.742
SRR8316898Complete white stage 9.150
SRR8316899Complete white stage 32.003
SRR8316903Complete white stage 21.265
SRR8316902Silver flowering stage15.086
SRR8316904Silver flowering stage25.562
SRR8316905Silver flowering stage10.615
SRR8316906Gold flowering stage 58.821
SRR8316907Gold flowering stage 49.369
SRR8316908Gold flowering stage 54.907
SRP132670SRR6706286Control22.290
SRR6706287Light intensity 50%24.427
SRR6706288Light intensity 20%26.706
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.026
CNS0095593Slightly white alabastrum(diploid) 213.861
CNS0095594Slightly white alabastrum(diploid) 314.246
CNS0095595Whole white alabastrum(diploid) 214.350
CNS0095596Whole white alabastrum(diploid) 312.232
CNS0095597Whole white alabastrum(diploid) 413.304
CNS0095598Silvery flower (diploied) 116.028
CNS0095599Silvery flower (diploied) 216.994
CNS0095600Silvery flower (diploied) 339.472
CNS0095601Golden flower (diploid) 113.553
CNS0095602Golden flower (diploid) 228.972
CNS0095603Golden flower (diploid) 328.506
CNS0095604Slightly white alabastrum(tetraploid) 112.039
CNS0095605Slightly white alabastrum(tetraploid) 210.152
CNS0095606Slightly white alabastrum(tetraploid) 324.189
CNS0095607Whole white alabastrum(tetraploid) 17.679
CNS0095608Whole white alabastrum(tetraploid) 27.828
CNS0095609Whole white alabastrum(tetraploid) 319.119
CNS0095610Silvery flower (tetraploid) 134.899
CNS0095611Silvery flower (tetraploid) 233.977
CNS0095612Silvery flower (tetraploid) 324.284
CNS0095613Golden flower (tetraploid) 113.343
CNS0095614Golden flower (tetraploid) 223.861
CNS0095615Golden flower (tetraploid) 331.859
CRA001975CRR073297Stem 123.363
CRR073298Stem 218.892
CRR073299Stem 312.928
CRR073300Leaf 123.082
CRR073301Leaf 219.179
CRR073302Leaf 314.764
CRR073303Juvenile bud 118.114
CRR073304Juvenile bud 211.542
CRR073305Juvenile bud 322.690
CRR073306Third green 15.678
CRR073307Third green 24.175
CRR073308Third green 37.518
CRR073309Second white 110.893
CRR073310Second white 221.735
CRR073311Second white 321.190
CRR073312Silver flowering 17.359
CRR073313Silver flowering 26.877
CRR073314Silver flowering 36.689
CRR073315Gold flowering 112.345
CRR073316Gold flowering 226.466
CRR073317Gold flowering 313.289
CRR073318Tawny withering 112.873
CRR073319Tawny withering 211.903
CRR073320Tawny withering 39.241