Detail information of GWHGAAZE003000


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFK42989.16.42097E-60unknown [Lotus japonicus]
Swissprottr|Q43582|LSM4_TOBAC0.0000008Probable U6 snRNA-associated Sm-like protein LSm4
trEMBLtr|I3SRU7|I3SRU7_LOTJA2E-60Uncharacterized protein {ECO:0000313|EMBL:AFK42989.1}
TAIR10AT4G02840.15E-48Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8984183189846768-
GWHAAZE00000001mRNA8984183189846768-
GWHAAZE00000001exon8984659089846768-
GWHAAZE00000001exon8984640089846476-
GWHAAZE00000001exon8984289589843086-
GWHAAZE00000001exon8984183189841910-
GWHAAZE00000001CDS8984659089846768-
GWHAAZE00000001CDS8984640089846476-
GWHAAZE00000001CDS8984289589843086-
GWHAAZE00000001CDS8984183189841910-
Transcript Sequence

Network for GWHGAAZE003000

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.23LSM601244.00E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11087SNRPD1, SMD1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000387biological_processspliceosomal snRNP assembly

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.701
SRR3591706second leaf31.227
SRR3591707mature leaf26.003
SRR3591708Shoot apex95.046
SRR3591709Stem40.774
SRR3591710White floral bud38.524
SRR3591711White flower48.884
SRR3591712Green floral bud49.066
SRR3591713Yellow flower38.598
SRP173429 SRR8316895Juvenile bud stage 27.980
SRR8316896Juvenile bud stage 31.103
SRR8316897Juvenile bud stage 19.583
SRR8316894Third green stage 16.330
SRR8316900Third green stage 37.655
SRR8316901Third green stage 38.702
SRR8316898Complete white stage 8.935
SRR8316899Complete white stage 37.568
SRR8316903Complete white stage 20.774
SRR8316902Silver flowering stage13.642
SRR8316904Silver flowering stage20.852
SRR8316905Silver flowering stage12.130
SRR8316906Gold flowering stage 30.710
SRR8316907Gold flowering stage 37.320
SRR8316908Gold flowering stage 33.378
SRP132670SRR6706286Control65.733
SRR6706287Light intensity 50%62.605
SRR6706288Light intensity 20%69.225
CNP0000432CNS0095592Slightly white alabastrum(diploid) 141.985
CNS0095593Slightly white alabastrum(diploid) 251.912
CNS0095594Slightly white alabastrum(diploid) 335.131
CNS0095595Whole white alabastrum(diploid) 228.780
CNS0095596Whole white alabastrum(diploid) 330.700
CNS0095597Whole white alabastrum(diploid) 429.869
CNS0095598Silvery flower (diploied) 140.672
CNS0095599Silvery flower (diploied) 240.803
CNS0095600Silvery flower (diploied) 326.502
CNS0095601Golden flower (diploid) 135.479
CNS0095602Golden flower (diploid) 225.241
CNS0095603Golden flower (diploid) 324.694
CNS0095604Slightly white alabastrum(tetraploid) 135.015
CNS0095605Slightly white alabastrum(tetraploid) 237.593
CNS0095606Slightly white alabastrum(tetraploid) 361.819
CNS0095607Whole white alabastrum(tetraploid) 117.586
CNS0095608Whole white alabastrum(tetraploid) 219.110
CNS0095609Whole white alabastrum(tetraploid) 328.223
CNS0095610Silvery flower (tetraploid) 130.127
CNS0095611Silvery flower (tetraploid) 224.718
CNS0095612Silvery flower (tetraploid) 315.964
CNS0095613Golden flower (tetraploid) 122.270
CNS0095614Golden flower (tetraploid) 232.504
CNS0095615Golden flower (tetraploid) 321.954
CRA001975CRR073297Stem 116.504
CRR073298Stem 219.638
CRR073299Stem 318.270
CRR073300Leaf 114.304
CRR073301Leaf 214.424
CRR073302Leaf 319.541
CRR073303Juvenile bud 112.552
CRR073304Juvenile bud 213.227
CRR073305Juvenile bud 316.631
CRR073306Third green 15.073
CRR073307Third green 27.507
CRR073308Third green 37.328
CRR073309Second white 18.242
CRR073310Second white 26.700
CRR073311Second white 35.499
CRR073312Silver flowering 16.090
CRR073313Silver flowering 24.884
CRR073314Silver flowering 34.001
CRR073315Gold flowering 113.408
CRR073316Gold flowering 211.764
CRR073317Gold flowering 311.659
CRR073318Tawny withering 116.551
CRR073319Tawny withering 216.723
CRR073320Tawny withering 312.582