Gene detail

Detail information of GWHGAAZE002991

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097711.1	0	PREDICTED: BTB/POZ domain-containing protein At1g55760 [Sesamum indicum]
Swissprot	tr\|Q680K8\|Y1576_ARATH	0	BTB/POZ domain-containing protein At1g55760
trEMBL	tr\|A0A067K8S1\|A0A067K8S1_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP32631.1}
TAIR10	AT1G55760.1	2E-151	BTB/POZ domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89702536	89704537	+
GWHAAZE00000001	mRNA	89702536	89704537	+
GWHAAZE00000001	exon	89702536	89702759	+
GWHAAZE00000001	exon	89703117	89703262	+
GWHAAZE00000001	exon	89703472	89703590	+
GWHAAZE00000001	exon	89703935	89704537	+
GWHAAZE00000001	CDS	89702536	89702759	+
GWHAAZE00000001	CDS	89703117	89703262	+
GWHAAZE00000001	CDS	89703472	89703590	+
GWHAAZE00000001	CDS	89703935	89704537	+

Transcript Sequence
>GWHTAAZE002995 AGAAGAAGAGAGAGAAAAGGAAAGCTGGGAATATCAGGAGAGGTGTGTTTGGAGGGAATCTTCGATTGTATCAATGAAATTACGGCCGCTTTTCAATTCGCTAGGATGAGCGATTCCGCATATCGAGTCGAAACGACGTCACGACTTGCTCAATGGCGGATCGACAATCTCGCCTCGTGTACTTACCGCAAATCCGATCCTTTCAAGATCGGAAAGTGGAACTGGCATTTAGCTGTAGAAAAGAGCAGGTCTTTGTCAATTAAATTGTACCCAGAGATATCGAATCTAACGAGGGACAACCCTCCAATTGCTTCTTTTATCATTCGAGTGGTCTCATCAGTGGGAGATCGCACGACTTTGGCTCACCCAGAAATTACAGATAAGCAGCTCAAGAATAACGAGGATTTTGTTTGGGCACTTGAGGTTCCATTAACCGGGAAATTCATCATCGACGTTGAATTTCTTGATTTGAAGACTGCATCTCCGGAGGGTGGAGAACCTTGCTCAATCTGGACAGAAGGATTCACACAAAAGGACTCAAATGCAACAGCCCTAACAGCCCTTGGCCGAATGTTAACAGAAAGCATTCACACGGACATTTCAATCAACGCCTCAGATGGAACCATAGGAGCCCATCGTGCGGTCCTCGCTGCACGATCGCCTGTCTTCCGCAGCATGTTTATACACGACCTCAAGGAAAAAGAACTGTCCACCATTAACATATCCGACATGTCCATTGAATCTTGCCAAGCCTTTCTCAATTACATTTACGGGAACATAAAGAACGAAGAATTTTTAACCCACCGATTGGCTCTTCTTCAAGCAGCCGATAAGTATGATATCTCGGATTTGAAAGAGGCCTGTCATAATAGTTTGCTAGAAGATATCGATACCAAGAATGTGCTAGAGAGGCTGCAAAATGCATCTCTTTTTCAATTGCCGAAGCTGAAAAGTAGTTGTATGCGGTATCTTGTGAAGTTCGGTAAGATATATGATATTCGAGATGATTTTGAGGCCTTTCTAAATTGTGCGGATAGGGAACTGATAGCTGAAATATTTCATGAAGTTCTTGCTGCCTGGAAAGGTTTCTGA

Network for GWHGAAZE002991

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.32	BTB	192	294	2.30E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10523	SPOP	Hedgehog signaling pathway	map04340
K10523	SPOP	Hedgehog signaling pathway - fly	map04341

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.932
	SRR3591706	second leaf	12.046
	SRR3591707	mature leaf	7.979
	SRR3591708	Shoot apex	4.808
	SRR3591709	Stem	66.558
	SRR3591710	White floral bud	8.513
	SRR3591711	White flower	14.596
	SRR3591712	Green floral bud	18.940
	SRR3591713	Yellow flower	17.369
SRP173429	SRR8316895	Juvenile bud stage	6.903
	SRR8316896	Juvenile bud stage	10.737
	SRR8316897	Juvenile bud stage	3.433
	SRR8316894	Third green stage	4.845
	SRR8316900	Third green stage	11.060
	SRR8316901	Third green stage	13.608
	SRR8316898	Complete white stage	1.501
	SRR8316899	Complete white stage	9.037
	SRR8316903	Complete white stage	2.567
	SRR8316902	Silver flowering stage	2.321
	SRR8316904	Silver flowering stage	3.843
	SRR8316905	Silver flowering stage	2.228
	SRR8316906	Gold flowering stage	15.935
	SRR8316907	Gold flowering stage	9.091
	SRR8316908	Gold flowering stage	7.659
SRP132670	SRR6706286	Control	12.503
	SRR6706287	Light intensity 50%	12.336
	SRR6706288	Light intensity 20%	11.501
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.859
	CNS0095593	Slightly white alabastrum(diploid) 2	8.512
	CNS0095594	Slightly white alabastrum(diploid) 3	8.174
	CNS0095595	Whole white alabastrum(diploid) 2	3.840
	CNS0095596	Whole white alabastrum(diploid) 3	3.692
	CNS0095597	Whole white alabastrum(diploid) 4	3.838
	CNS0095598	Silvery flower (diploied) 1	3.160
	CNS0095599	Silvery flower (diploied) 2	2.207
	CNS0095600	Silvery flower (diploied) 3	6.090
	CNS0095601	Golden flower (diploid) 1	3.115
	CNS0095602	Golden flower (diploid) 2	10.328
	CNS0095603	Golden flower (diploid) 3	10.632
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.232
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.130
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.986
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.827
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.952
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.384
	CNS0095610	Silvery flower (tetraploid) 1	7.495
	CNS0095611	Silvery flower (tetraploid) 2	10.934
	CNS0095612	Silvery flower (tetraploid) 3	3.359
	CNS0095613	Golden flower (tetraploid) 1	7.273
	CNS0095614	Golden flower (tetraploid) 2	13.384
	CNS0095615	Golden flower (tetraploid) 3	13.770
CRA001975	CRR073297	Stem 1	11.477
	CRR073298	Stem 2	10.708
	CRR073299	Stem 3	13.360
	CRR073300	Leaf 1	8.905
	CRR073301	Leaf 2	8.410
	CRR073302	Leaf 3	9.629
	CRR073303	Juvenile bud 1	3.179
	CRR073304	Juvenile bud 2	2.294
	CRR073305	Juvenile bud 3	2.660
	CRR073306	Third green 1	1.700
	CRR073307	Third green 2	2.327
	CRR073308	Third green 3	1.795
	CRR073309	Second white 1	5.364
	CRR073310	Second white 2	5.785
	CRR073311	Second white 3	5.509
	CRR073312	Silver flowering 1	3.969
	CRR073313	Silver flowering 2	3.296
	CRR073314	Silver flowering 3	3.971
	CRR073315	Gold flowering 1	2.723
	CRR073316	Gold flowering 2	2.700
	CRR073317	Gold flowering 3	2.500
	CRR073318	Tawny withering 1	30.995
	CRR073319	Tawny withering 2	16.399
	CRR073320	Tawny withering 3	47.638