Detail information of GWHGAAZE002971


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHN44065.16.2944E-120Protein CWC15 like [Glycine soja]
trEMBLtr|K7KN39|K7KN39_SOYBN2E-120Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G04621.1}
TAIR10AT3G13200.11E-62Cwf15 / Cwc15 cell cycle control family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8938462789388598-
GWHAAZE00000001mRNA8938462789388598-
GWHAAZE00000001exon8938846889388598-
GWHAAZE00000001exon8938775689387847-
GWHAAZE00000001exon8938758389387624-
GWHAAZE00000001exon8938710089387174-
GWHAAZE00000001exon8938574589385806-
GWHAAZE00000001exon8938505289385152-
GWHAAZE00000001exon8938462789384750-
GWHAAZE00000001CDS8938846889388598-
GWHAAZE00000001CDS8938775689387847-
GWHAAZE00000001CDS8938758389387624-
GWHAAZE00000001CDS8938710089387174-
GWHAAZE00000001CDS8938574589385806-
GWHAAZE00000001CDS8938505289385152-
GWHAAZE00000001CDS8938462789384750-
Transcript Sequence

Network for GWHGAAZE002971

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04889.13Cwf_Cwc_151801.40E-25
PF04889.13Cwf_Cwc_151022086.50E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12863CWC15 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000398biological_processmRNA splicing, via spliceosome
GO:0005681cellular_componentspliceosomal complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf116.665
SRR3591706second leaf71.229
SRR3591707mature leaf75.511
SRR3591708Shoot apex114.305
SRR3591709Stem144.600
SRR3591710White floral bud137.117
SRR3591711White flower121.254
SRR3591712Green floral bud115.438
SRR3591713Yellow flower135.401
SRP173429 SRR8316895Juvenile bud stage 74.220
SRR8316896Juvenile bud stage 116.449
SRR8316897Juvenile bud stage 53.375
SRR8316894Third green stage 44.560
SRR8316900Third green stage 131.677
SRR8316901Third green stage 130.491
SRR8316898Complete white stage 53.316
SRR8316899Complete white stage 186.842
SRR8316903Complete white stage 95.064
SRR8316902Silver flowering stage65.625
SRR8316904Silver flowering stage72.834
SRR8316905Silver flowering stage42.259
SRR8316906Gold flowering stage 138.689
SRR8316907Gold flowering stage 139.244
SRR8316908Gold flowering stage 118.504
SRP132670SRR6706286Control167.398
SRR6706287Light intensity 50%161.140
SRR6706288Light intensity 20%172.583
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1136.723
CNS0095593Slightly white alabastrum(diploid) 2146.497
CNS0095594Slightly white alabastrum(diploid) 3148.333
CNS0095595Whole white alabastrum(diploid) 2141.041
CNS0095596Whole white alabastrum(diploid) 3152.461
CNS0095597Whole white alabastrum(diploid) 4166.824
CNS0095598Silvery flower (diploied) 1119.806
CNS0095599Silvery flower (diploied) 2121.528
CNS0095600Silvery flower (diploied) 3111.582
CNS0095601Golden flower (diploid) 1136.294
CNS0095602Golden flower (diploid) 2115.934
CNS0095603Golden flower (diploid) 3116.704
CNS0095604Slightly white alabastrum(tetraploid) 1102.427
CNS0095605Slightly white alabastrum(tetraploid) 2104.352
CNS0095606Slightly white alabastrum(tetraploid) 396.002
CNS0095607Whole white alabastrum(tetraploid) 1109.851
CNS0095608Whole white alabastrum(tetraploid) 298.638
CNS0095609Whole white alabastrum(tetraploid) 385.557
CNS0095610Silvery flower (tetraploid) 196.213
CNS0095611Silvery flower (tetraploid) 287.856
CNS0095612Silvery flower (tetraploid) 384.779
CNS0095613Golden flower (tetraploid) 189.726
CNS0095614Golden flower (tetraploid) 295.932
CNS0095615Golden flower (tetraploid) 386.397
CRA001975CRR073297Stem 1131.107
CRR073298Stem 2131.204
CRR073299Stem 3142.609
CRR073300Leaf 1158.667
CRR073301Leaf 2156.143
CRR073302Leaf 3129.989
CRR073303Juvenile bud 1164.393
CRR073304Juvenile bud 2132.907
CRR073305Juvenile bud 3141.227
CRR073306Third green 1108.402
CRR073307Third green 2119.642
CRR073308Third green 3107.864
CRR073309Second white 188.805
CRR073310Second white 299.525
CRR073311Second white 387.891
CRR073312Silver flowering 1105.523
CRR073313Silver flowering 294.867
CRR073314Silver flowering 395.622
CRR073315Gold flowering 1117.287
CRR073316Gold flowering 2126.797
CRR073317Gold flowering 391.243
CRR073318Tawny withering 1164.065
CRR073319Tawny withering 2177.936
CRR073320Tawny withering 3160.073